Lagopus muta (rock ptarmigan): 125691953
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Entry
125691953 CDS
T09141
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125691953 (PCDH18)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Protocadherins
125691953 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
G1_gp67_N
Syndecan
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
125691953
NCBI-ProteinID:
XP_048797931
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All DBs
Position
4:complement(9353283..9362990)
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AA seq
1141 aa
AA seq
DB search
MNCRNLQTRRAGSRMHFTFLFALAVACLDKAVLGKNLKYRIYEEQRVGSVIARLAEDVAD
VLLKIPNPASVRFRAMQRGNSPLLVVREDNGEISIGAKIDREQLCQKNLNCSIEFDVITL
PTEHLQLFHVEVEVLDINDNSPQFSRALIPIEISESAAVGTRIPLDSAFDPDVGDNSLHT
YSLSDNDFFSIEVRTRTDGAKYAELIVVKELDRELKSSYELQLTASDKGVPQRSGSSLLK
ISISDSNDNSPAFEQQSYIIQLLENSPVGTLLIDLNATDPDEGANGKVVYSFSSHVSPKI
METFRIDSEKGHLTLLKQVDYEMTKSYEIDAQAQDMGPNSIPAHCKIIIKVVDVNDNRPE
ISLNLMSPEKEETAYVSEGSPLDTFVALVRVQDKDSGVNGEVVCKLHGHGHFKLQKTYEN
NYLILTNASLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQISDENDNPPRFQTNRYEVV
ILENNSPGAYITSVTATDPDLGDNGQVTYTILENSVLGSSITTYVTIDPSNGAIYALRTF
DHEEVNQIAFMVQARDGGSQQLVSNTTVVLTIIDENDNAPVIVGPALRNSTAEISIPKDA
GIGFLVTRIRATDRDSGMNSELSCSIAADKENSIFVMDPKTCDISINVSVESVPTKHWEF
FVIVQDKGSPQLSTKALLKCTVFEYVYSFSSTEATLVSQPSLDVSMITIISLGSICAVLL
VIMVIFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSH
HRASPSSSPTLERGQMSSRQSHHSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQL
LSMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRESPID
RLLGEGFSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEF
QSPQQQLQQQQQGLEEDPQPADASEKKKSFSTFGKDCQGEEESGDTCTSSLLSEMSSVFQ
RLLPPSLDAYTECNEMERLNSLERRKGHLPAKAVNYPQGVAAWAASTHFQNPANNGPTLG
THSSAQPSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQ
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcagaaacttacaaacgcggcgggctggcagcagaatgcactttacgttcctt
tttgcactggcggttgcgtgtctcgataaggctgtgctgggcaagaacctgaagtaccgg
atttacgaggagcagcgggtcggctcggtcatcgccaggctggcggaggacgtggccgat
gttctattgaaaatccccaaccccgcctcggtccgcttccgagccatgcagagggggaac
tccccgcttctcgtcgtccgagaggataacggggagatcagcatcggcgctaagatcgac
cgggagcaactctgccagaaaaacttgaactgctccatcgagttcgacgtgatcactctg
cccaccgagcatctgcagctcttccatgtggaagtggaggtgctggacatcaacgacaac
tcccctcagttttccagggctctcatccccatcgaaatatctgagagcgctgccgtgggt
acccgcatccctctggacagtgctttcgacccagatgtgggggacaactccctccacact
tactccctttccgacaacgattttttcagcatcgaggtgaggacgaggactgatggtgcc
aagtatgcagagctcatcgtggtgaaggagctggacagggagctgaagtcgagttacgag
ctccagctcaccgcatccgataagggggtgccgcagaggtctgggtcttccctcctgaaa
atcagcatttctgactccaacgacaacagcccagcttttgagcagcagtcctatataatt
caactcttggaaaactccccagtcgggactttgctcatagacctcaatgcgaccgaccca
gatgagggcgctaatgggaaggtcgtgtactccttcagcagtcatgtgtctcccaaaatt
atggagactttcaggatagattcagaaaaaggccatctgaccctcctgaaacaagtggac
tatgaaatgaccaagtcctatgaaattgatgctcaggctcaagacatgggaccaaattcc
attccagctcactgcaaaattataattaaagttgtggatgtgaatgacaacagaccggaa
atcagcttaaatttgatgtccccggaaaaggaagaaacggcttatgtttctgaggggtcc
cccctggacacgtttgtcgccctggtcagggtacaggacaaggactcgggtgtaaacgga
gaggtggtttgcaagctccatggtcatggccactttaaactgcaaaagacttacgaaaat
aactatttaatcttgactaatgccagtctagatagagaaaagagatctgaatacagcttg
actgtaatagcagaggacaagggaacgccaagtctctcaacagtaaaacactttactgtc
caaatcagtgatgaaaatgacaacccaccccgcttccagacaaacagatatgaagtagtt
atcttagagaataactctccgggagcgtacatcacatccgtcacggccacagacccagat
ctaggggacaacggacaggtgacctacactatactggagaattctgttttgggaagttct
ataaccacctatgtgaccattgatccctccaacggggcgatctatgccttgagaactttt
gaccatgaagaggtaaatcagattgcctttatggttcaagctagggatggagggagccag
caacttgttagtaacactacagtggtgctaaccatcattgatgaaaatgacaatgctcct
gtcatcgtgggcccagcactgcgcaacagcacggcggaaatctcaatccctaaagatgct
gggattggctttcttgtcacgaggataagggctacggatcgggactccggtatgaactct
gaactcagctgctccatagcagctgacaaggaaaacagcatctttgtgatggatcccaaa
acttgtgacatctccatcaatgtgagtgtagaatcggttccaactaagcactgggagttt
tttgtcatagtccaggataaaggcagtcctcagctgagtactaaagcacttctgaagtgt
acggtttttgagtatgtttattcattttcaagcacagaagctactttggtaagccagccc
tctctggatgtctcgatgataacaattatatccttaggatcgatatgtgccgtgttgctg
gtcatcatggttatctttgctacgagatgtaatcgagagaaaaaggacaccaggtcctac
aactgccgggtggcagaatcgacctaccagcaccacccgaagcggccctccagacagatc
cacaaaggggacatcacactggtgccaacagttaacggcacgctacccatccgatctcac
cacagagcttccccgtcctcatccccgaccctggagaggggacagatgagcagccggcag
agccaccacagccaccaatcgttgaacagcctggtgacaatctcctccaaccacgtgcct
gagaacttctcactggagctcacccacgctactccagcagttgagcaggtttctcaactc
ctctcgatgcttcaccagggccagtatcaaccaaggccgagttttcgaggaaacaaatat
tccagaagctatagatatgcccttcaagatatggataaattcagcctgaaagacagtggc
cggggtgatagcgaagctggagacagcgattatgatttgggtagagagtctccaattgac
agacttcttggggaaggattcagtgaccttttccttacagatgggagaattcctgcagca
atgcggctgtgcacggaggaatgcagggttctaggccactctgaccagtgctggatgcca
ccactgccatctccctcatctgattacagaagtaacatgttcatccccggggaggagttt
cagtcgccccagcagcagctgcagcagcagcagcagggcctcgaggaagatccgcagcct
gctgacgccagtgaaaagaagaagagcttttcaacatttggcaaagactgtcagggtgag
gaggaatcaggagacacttgtacctcctctcttctctctgaaatgagcagcgtcttccag
cgcctgctgcctccctcgctagatgcctacacagaatgcaatgagatggaacgcttgaat
tcgttggagcgcaggaagggacatttgcctgccaaggctgtgaattatccacagggagtg
gctgcgtgggcagccagcactcatttccaaaatccagccaacaatgggccaactctgggg
actcactcgagtgcacagccctcctccaaatggctgccagccatggaggaaatcccggag
aattatgaagaagatgattttgacaatgtactcaatcacctcagtgatggtaaacatgaa
ctcatggatgccagcgagctggtggcagaaattaacaagctgctgcaagatgtccggcag
aactaa
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