Lagopus muta (rock ptarmigan): 125691982
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Entry
125691982 CDS
T09141
Symbol
DHX15
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125691982 (DHX15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125691982 (DHX15)
03009 Ribosome biogenesis [BR:
lmut03009
]
125691982 (DHX15)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125691982 (DHX15)
Spliceosome [BR:
lmut03041
]
Complex A
U2 snRNP components
U2 related factors
125691982 (DHX15)
Complex B
125691982 (DHX15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125691982 (DHX15)
Ribosome biogenesis [BR:
lmut03009
]
Eukaryotic type
90S particles
Helicases
125691982 (DHX15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Atrophin-1
SRP54
nSTAND3
Flavi_DEAD
AAA_25
AAA_29
Apis_Csd
Motif
Other DBs
NCBI-GeneID:
125691982
NCBI-ProteinID:
XP_048797962
LinkDB
All DBs
Position
4:53918305..53959333
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGKDRDRDRDRDDRKDRDRDRDRDRDRDREREKEKELRAA
SNSTLIAAGLPPMKPAMIPHSINPFTNLPHTPRYYDILKKRLQLPVWEYKERFTDILIRH
QSFVLVGETGSGKTTQIPQWCVDYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRADLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHA
FKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKAL
VTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggcaccgcttagatctgggcgacgattacagctccagcaagaagcgctct
gacgggaaggatcgtgaccgagacagggaccgtgatgaccggaaagatcgtgacagggat
cgtgacagagacagagatcgtgacagagaaagggagaaggaaaaggagctgcgagctgca
tctaactctacgctcattgctgctgggttaccacctatgaaaccagcaatgattccacac
agtattaaccctttcacaaatctaccacatacacctcgttattatgacatactgaagaaa
cgactacagcttcctgtctgggaatataaagaaagattcacggatattttgattaggcat
cagtcatttgtgctggttggagagactgggtctggtaaaacaacacagatccctcaatgg
tgtgttgactacatgcgctcgttacctggaccaaagaggggagtagcatgtacccagccg
aggagagtggctgccatgagtgtggcgcagagggttgctgatgagatggatgtaatgctg
ggccaggaggttggttactccatccgatttgaagactgcagtagtgcaaaaactattctc
aagtatatgactgatggtatgttacttcgtgaagcaatgaacgatcctttgctggagcgc
tatggcgttataattcttgatgaggcccatgagagaacactggctacggatattttgatg
ggagtgctgaaagaagttgtaagacagagagctgatttgaaggtcatagttatgagtgct
actttggatgctggcaagtttcagatctactttgataactgtcctcttctaactattccg
ggtcgcacccatcctgtggagatattctatactccagaaccagaaagggattaccttgag
gctgccattcgaacagtgatccagattcacatgtgtgaagaagaggaaggagatcttctg
ctgtttcttactggacaggaggagattgatgaagcctgcaagaggataaaacgtgaaatt
gatgacttgggtcctgaagtgggtgacatcaaaatcattccattgtattctacccttcct
cctcagcaacaacagaggatttttgaacctcccccaccaaaaaaacagaacggcgcaata
ggaagaaaggttgttgtgtccactaacattgctgagacatcattaacaatagatggcgtt
gtgtttgtgatcgatcctggctttgcaaaacaaaaggtatataatcctcgtatcagagtg
gagtctctcttggtgactgcaattagtaaagcttctgctcagcagcgggctggccgtgct
ggtcgtactagaccaggcaagtgcttcaggctttacacagagaaggcttacaaaactgaa
atgcaggataacacgtaccctgagattttgaggtctaacttaggatctgtagtgttgcag
ctcaagaagcttggtatagatgatttggtgcactttgattttatggatcctccagctcct
gaaactctgatgagagccttagagctcttgaattatttggctgctttaaatgacgatgga
gacttgactgagttgggatccatgatggctgaatttccactggacccacaactggctaaa
atggttattgcaagttgtgactacaactgttctaacgaggtcctatctattactgccatg
ttgtcagtcccacagtgttttgttcgtcccacggaagcaaagaaagcagcagatgaagcc
aagatgaggtttgcccacattgatggagatcatctgacgctgctgaatgtctaccatgct
ttcaaacaaaatcatgagtcggttcagtggtgctatgacaacttcattaactacaggtcc
ctgatgtctgcagacaacgtacgccagcagctgtcacgaatcatggatagatttaatttg
cctcgtagaagcacagactttaccagccgagactattatatcaatataagaaaggcatta
gttactgggtatttcatgcaggtggcacacttggaacgaacagggcattacttaacagta
aaagataaccaagtggtacagttgcatccttccactgttctcgatcacaaaccagagtgg
gtgctttataatgagtttgtcctaacaacaaagaactacatccggacatgtacagacatc
aaacctgaatggctggtgaaaattgcccctcagtactatgacatgagcaattttccacag
tgtgaagcaaagaggcagttggatcgcatcattgccaaacttcagtccaaggaatactcg
cagtactga
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