Lagopus muta (rock ptarmigan): 125692014
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Entry
125692014 CDS
T09141
Symbol
SMARCA5
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125692014 (SMARCA5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125692014 (SMARCA5)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125692014 (SMARCA5)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
125692014 (SMARCA5)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
125692014 (SMARCA5)
RSF complex
125692014 (SMARCA5)
WICH complex
125692014 (SMARCA5)
B-WICH complex
125692014 (SMARCA5)
NORC complex
125692014 (SMARCA5)
BRF complex
125692014 (SMARCA5)
NuRF complex (fruit fly)
125692014 (SMARCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
125692014
NCBI-ProteinID:
XP_048798001
LinkDB
All DBs
Position
4:11262351..11286286
Genome browser
AA seq
1207 aa
AA seq
DB search
MCAPAELPAGFACAPVTPPRWSRLLPPPPPPRAALSTRRSVTGPHSRSCARGSPAPVRLL
RGRAREGGCERSGANGRPRRRKRRAARDALAPAAPHVEAGLSRERVAGSVPGWWDPAEKA
GAAAGRASVAGRAPGSDRSGPTPPPGRPPRARSQPGAGPARVPPERRLWRGIMSAGQQGP
PPPDEPPAPPGAGGGEAAGTAPAGPAGAGAAMEESFNDASPGKPKEIQEADPTYEEKMQT
DRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRT
EQEEDEELLTESSKTTNVCTRFEESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE
MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQ
RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE
FKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVERLHM
VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRL
LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS
QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGI
NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR
LDSIVIQQGKLVDQNLNKLGKDEMLQMIRHGATHVFASKESEITDEDIDHILERGAKKTA
EMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKMAFTEWIEPPKRERKANYAVDA
YFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDL
PNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIE
NIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIG
RYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFD
WFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQKRKMDGTPDGRG
RKKKLKL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgccccggccgagctaccagccggctttgcctgcgcacccgtgacgccaccgcgc
tggtcccgcctccttcccccgccccccccaccgcgcgcggccctcagcacgcggcgctcc
gttaccggcccgcacagccgttcgtgcgcgcgaggcagccccgcccccgtccggctgttg
cgtggccgcgctcgcgaaggcgggtgcgagaggagcggcgccaacggccgcccaaggagg
aggaagaggagggcggctcgcgacgcgctcgctcccgccgcgccgcacgttgaggccggg
ctctcgcgagagcgggttgccggctcggttcctggttggtgggatcccgccgagaaagcc
ggggcggcagcgggacgggcctctgtcgccggtcgcgcaccgggctctgatcgcagcggc
ccgaccccgccgccgggccgcccgccgcgggcgcgcagccagccgggcgctggcccggcc
cgcgtcccgcccgagcgccgtctgtggagagggatcatgtccgccgggcagcagggaccg
ccgccgccggacgagccgcccgcgccgccgggggccggcggcggagaggcggcggggacg
gctcccgccgggcccgctggagccggcgccgcgatggaggaatcttttaatgatgcgtca
ccaggaaaaccaaaagaaatccaggaagcagatcctacatatgaagagaaaatgcaaaca
gacagagcaaacagatttgagtatctgttgaagcagactgagctgtttgctcacttcatt
cagcctgctgctcagaaaactccaacttcacctttgaaaatgaaaccaggacgtccacga
ataaagaaggatgagaagcagaacttgctgtcagttggcgactatcgccatcgtagaaca
gaacaggaagaagatgaggagctgttaacagaaagctccaagacaaccaatgtctgcact
cggttcgaagaatctccatcatatgttaagtggggaaagctgcgtgattatcaggtccga
ggattgaactggctcatttctttatatgaaaatggcatcaatggtatcctagcagatgaa
atgggtcttgggaagacactgcagacaatctctctccttggatatatgaaacactacaga
aatattcctggtcctcacatggtgttagttcccaagtccaccctacataactggatgaat
gaattcaagagatgggtacctacgcttcgagcagtgtgcttgataggtgacaaagaccag
cgagctgcctttgtcagagacgtgttgttgccaggagagtgggatgtctgtgtcacgtcg
tatgaaatgcttatcaaagaaaaatcagtattcaagaagtttaactggagatatttagtc
atagatgaagcccacaggattaaaaacgaaaaatcaaagttatcagaaatagtgagagaa
ttcaagaccacaaatcggctgctgctaactggaactccacttcagaacaacttacatgaa
ctctgggcgcttcttaacttccttttgccagacgtcttcaattcgtctgaagactttgac
tcatggtttgatacgaacaactgtctaggggatcaaaagttggtggagcgtctccatatg
gtcttacgaccattccttttacgtcgcattaaggctgatgtagagaaaagtttacctcca
aagaaggaagtgaaaatttacgtgggtctcagcaaaatgcaacgagaatggtatacaaga
atcttaatgaaggatatagatattttgaattctgctggaaagctggacaaaatgagactg
ctgaatatcctaatgcaactgcgaaaatgttgcaatcatccctatctctttgacggagca
gaacctggtccaccttacacaacagatatgcatttggtcaccaacagtggcaagatggta
gtactggacaaattactaccaaagctgaaagagcaaggttcacgagtcttaatcttcagc
cagatgaccagagtcctggatatcttggaagattattgtatgtggcgaaattatgagtac
tgtagactggacggacaaacacctcatgacgaaagacaggcttctattaatgcatataac
gaacctggtagctcgaaatttgtcttcatgttgagtacacgggctggaggtcttggaatc
aatttggctaccgctgatgttgtaattctgtacgattcagactggaatccacaagtagat
cttcaggctatggatcgagctcacagaattggtcaaacaaagactgtaagagtgttcaga
tttatcacagacaatacagtggaagaaaggatagtggagcgtgcagaaatgaaactccgc
ctcgattccatagtcattcagcaaggcaaactggtggatcaaaatttgaataaacttggg
aaggatgaaatgctgcaaatgattcgacacggagcgacgcatgtgtttgcctccaaggag
agtgagattacagatgaagatatagatcacattttggaaagaggtgcaaaaaagactgca
gaaatgaacgaaaaactttccaagatgggtgaaagctcactcagaaatttcacgatggat
acagaatccagcgtatataattttgaaggggaggactacagagaaaaacagaagatggca
tttacagagtggattgaaccacctaaacgagaaagaaaggccaattacgccgtggacgct
tacttcagagaggctcttcgagtcagcgagccaaaagcacccaaggcaccacggcctcca
aaacagccaaatgtacaggactttcagttctttcctccacgactctttgaactactggaa
aaagagattctctactacaggaaaacaatcgggtacaaggtacctcgtaatcctgatctt
ccgaatgcagcccaagcgcaaaaggaagagcagcttaagattgatgaagctgaacctctt
aatgacgaagaactagaagaaaaagagaagcttctcacccagggatttactaactggaat
aagagagattttaaccagttcatcaaagctaatgagaagtggggccgtgacgatattgaa
aatatagcacgagaagtagaaggaaaaaccccggaggaagtcattgagtattcagctgtg
ttctgggaaaggtgcaacgaacttcaagacatagagaagatcatggctcagatagaaaga
ggagaagccagaattcagagacggatcagcataaaaaaagcacttgatacgaagattggc
agatacaaagcccctttccaccagctaagaatatcgtatggtactaacaaagggaagaat
tacactgaagaggaggatcgctttttaatctgcatgcttcacaagctaggatttgataaa
gagaacgtctacgatgaattaagacagtgtatccgaaactccccccagttcagatttgac
tggtttctcaagtctagaactgctatggagctacagaggagatgcaatactttaatcacc
ctgattgaaagagagaacatggaactggaagaaaaggaaaaggcagagaagaagaaacgc
ggaccaaaaccatcttcggcacagaagcgcaaaatggatggtactcctgacggtcgtgga
agaaaaaagaagctaaagctgtga
DBGET
integrated database retrieval system
