Lagopus muta (rock ptarmigan): 125692539
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Entry
125692539 CDS
T09141
Symbol
PDGFRA
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04010
MAPK signaling pathway
lmut04020
Calcium signaling pathway
lmut04144
Endocytosis
lmut04510
Focal adhesion
lmut04540
Gap junction
lmut04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125692539 (PDGFRA)
04020 Calcium signaling pathway
125692539 (PDGFRA)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125692539 (PDGFRA)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125692539 (PDGFRA)
04540 Gap junction
125692539 (PDGFRA)
09142 Cell motility
04810 Regulation of actin cytoskeleton
125692539 (PDGFRA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lmut01001
]
125692539 (PDGFRA)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lmut04090
]
125692539 (PDGFRA)
Enzymes [BR:
lmut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
125692539 (PDGFRA)
Protein kinases [BR:
lmut01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
125692539 (PDGFRA)
CD molecules [BR:
lmut04090
]
Proteins
125692539 (PDGFRA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
ig
I-set
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Motif
Other DBs
NCBI-GeneID:
125692539
NCBI-ProteinID:
XP_048799141
LinkDB
All DBs
Position
4:complement(45747527..45781880)
Genome browser
AA seq
1087 aa
AA seq
DB search
MGAPPRTFLILGCFLTGPFLTLCQLPLPTIVPNRNEMVVQLNSNFTLKCSGDSEVSWQYP
VTEGSHRIDIRHEENNSGLFVTVLEVGNASAAHTGMYVCYYNHTQVEDGEVEGKDIYIYV
PDPDMPFVPSLPEDQFILVEEGDPTVIPCRTSDPSAEVTLVNSLDKPVYAFYDSKQGFVG
NFLAGPYTCKTMVKGMEFKSDEFLIYILRATSQLPVEIEALKTVYKTGETIVVTCVVFDN
EVVNLQWNYPGKVKEKGLIKLDDIKVPSQKLVYTLTIPDASVKDTGDYECTARHATKEVK
ENKKVVITVHDKGFIHLEPQFSPLEAVNLHEVKNFVVDVQAYPAPKMYWLKDNVTLIENL
TEIVTSSNRVQETRFQSVLKLIRAKEEDSGYYTLVAENEDEIKRYTFSLLIQVPALILDL
MDDHQGSAGRQTVRCLAEGTPLPDVEWLVCKDIKKCSNDTSWTLLTNNISDIHMEAHMDE
KNMVESQVTFQKVEETLAVRCVARNDLGAVTRELKLVAPTLRSELTVAAAVLVLLVIVII
SLIVLVIIWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILG
SGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNL
LGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGMNPADESTRSY
VILSFENTGEYMDMKQADTTQYVPMLERKEGSKYSDIQRSVYDRPASYKKKSLSDSEVKN
LLSDDSSEGLSLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLA
RDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMM
VDSTFYNKIKSGYRMAKPDHATNEVYEIMVKCWNSEPEKRPSFYHLSEIVESLLPGEYKK
SYEKIHLDFLKSDHPAVTRMRGDCDNAYIGVTYKNEDKLKDRESGFDEQRLSADSGYIIP
LPDIDPVSEDELGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGIDSSD
LVEDSFL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctcccccaaggacgttcctgatcctgggatgttttctcacaggaccgttccta
acactttgccagcttcctctgccgactattgttcccaacagaaatgagatggttgtacag
ctgaattccaatttcacactcaaatgctctggagacagcgaagtgagctggcagtaccca
gtgaccgagggaagccacaggatagacatcagacacgaggagaacaacagtggcctcttc
gtgacagtgctcgaagtcggaaatgcctcagccgctcacacgggcatgtatgtttgctat
tataaccacacgcaagtggaggatggggaagttgaggggaaggacatctacatctatgtg
cctgatccagacatgccttttgttccttccttaccagaagatcagttcatcctagtagaa
gaaggtgatcccaccgttatcccttgtcggacaagtgacccaagtgctgaagtgacttta
gttaacagtttagacaagcccgtctatgctttctacgacagcaaacaaggcttcgtaggg
aacttccttgcaggaccatacacatgcaaaacaatggttaaaggcatggagttcaagtcc
gatgagttcctcatctatattttaagagctacttcacagctgccggttgaaattgaagct
ctgaaaactgtctacaaaacaggcgagaccatcgtagtgacttgtgtggtctttgacaat
gaggtggttaatttacagtggaattatccagggaaagtgaaagaaaaaggtctgataaaa
cttgatgatatcaaagtcccatcgcagaagttggtttacacgttgaccattcctgacgcc
tcagtgaaagacacaggggattatgaatgtactgctcgacatgcaaccaaggaggttaag
gaaaataagaaagtagtcattacagttcatgacaaagggttcattcatctagagcctcag
tttagccctttggaagctgtcaatctacatgaagtcaaaaattttgtcgtcgatgtgcag
gcgtaccccgctccaaaaatgtactggttgaaggataatgtgactctgattgaaaatctt
actgagattgttactagttcaaacagggtccaggaaacacggtttcaaagtgtactaaaa
ttgatccgggccaaggaagaagacagtgggtactatactttggttgctgaaaatgaagat
gagattaagagatacacgttctcgttactaatacaagttccagccttgatcttagacctc
atggacgaccaccaaggctctgctggcaggcagacagtgaggtgcttggctgaagggacc
ccgcttcctgatgtggaatggctggtttgcaaggacattaaaaaatgcagcaatgacact
tcctggactcttctgactaacaatatctctgatatacacatggaagcccacatggatgag
aagaatatggtggaaagccaggtgaccttccagaaggtagaggaaaccctggctgtgaga
tgtgtagcaagaaacgaccttggtgctgttactcgggaactgaaacttgtggctcccacc
ttgcgatcagaactgacagtggctgctgccgtcttagtactgttggtgattgtgataatt
tcactgattgtcctggtcatcatctggaaacagaagccgaggtatgagataagatggaga
gtcattgagtctatcagccctgatgggcatgaatacatttatgtggacccaatgcagcta
ccttatgactccagatgggagtttcctcgagatgggttagtgcttggtcgaatccttggt
tctggtgcattcggaaaagtggtggaagggacagcatatggactgagtcgttctcaacca
gtgatgaaagtagctgtgaaaatgctgaaacctacggctagatccagtgaaaaacaggca
ctcatgtctgaactgaagataatgacacatcttgggccccacctgaatattgtgaacctg
cttggagcttgtacaaaatcaggtcctatttacataatcactgaatactgcttttatggt
gatttggtgaactatctgcacaagaacagggacaacttcctcagtcgacatccagagaaa
ccaaagaaagatctggatatctttgggatgaacccagctgatgaaagcacaagaagctat
gtgattttatcatttgaaaacactggagaatacatggacatgaaacaagctgatacaact
cagtatgtgccaatgctggaaaggaaagagggatctaaatactctgatattcagagatct
gtgtatgatcgacctgcttcatataagaagaagtctttgtcagattcagaagtaaaaaac
cttctttcagatgacagttcggagggtctgagcctactggatttgctaagcttcacctac
caggttgcacggggaatggaattcttggcttctaaaaattgcgtgcaccgtgacttggca
gctcgtaatgtccttctggctcaaggcaaaattgtgaagatctgtgactttgggttggct
agagacatcatgcatgattccaactacgtctccaagggcagcaccttccttccagtaaaa
tggatggcacctgaaagcatttttgacaatctgtacacaacattaagtgatgtctggtct
tatggtattctgctgtgggaaatattttctcttggtggcacaccatatcctggcatgatg
gttgactccactttctacaataagataaagagtggctaccgaatggcaaaacctgatcat
gcaaccaatgaagtgtatgagatcatggtaaagtgctggaacagtgaaccagagaaaaga
ccttcattttaccatttgagtgaaatcgtggagagtttgttgcctggagagtacaaaaag
agctacgagaagattcacctggacttcctgaaaagcgaccacccagctgtcactcgaatg
agaggggactgtgacaatgcttacattggtgtcacctacaagaacgaagacaagttaaag
gatagagagagcggatttgatgagcagaggctgagcgctgacagtgggtacatcatcccc
ctgcctgacattgaccctgtttctgaagatgagcttggcaaaaggaacaggcacagttca
cagacatctgaagaaagtgccattgaaactggttccagtagctctacttttatcaagaga
gaggacgagaccattgaggacattgacatgatggatgacatcgggattgactcctcggat
ctggtagaggacagcttcctgtaa
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