Lagopus muta (rock ptarmigan): 125692575
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Entry
125692575 CDS
T09141
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125692575 (COL25A1)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125692575 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125692575
NCBI-ProteinID:
XP_048799213
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All DBs
Position
4:18324280..18469405
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AA seq
592 aa
AA seq
DB search
MDGKLGQPGPQGPPGPKGEKGDQGDQGPRGLPGFPTVAALHSNQILTVKGDQGQAGPPGP
PGPPGPRGPPGDTGKDGPRGMPGIPGEPGKPGEQGLAGPQGPPGQKGSVGVPGVPGKDGQ
MGEPGLPGIAGEKGAAGLKGDPGERGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGES
GRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPPGKGERGETG
LPGPKGRTGEPGSRGPKGSKGDTGDRGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEAL
QRIATLTVTGPPGPPGPQGLQGPKGEPGSPGIPGVDGEQGPKGLKGDMGEPGMHGEKGGI
GLPGLPGANGMKGEKGDAGLPGAQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNG
LKGLKGEQGQKGDRGPLGLPHHLLISRSCHPCRTHHPCFHLTTQGASGLDGKPGPRGIDG
PVGPHGPAGPKGDRGEKGTVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGEIGEKGEKG
EKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLIAKKR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaagctgggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaag
ggagatcaaggtgatcagggccctcggggtctgccaggcttccccacagtcgctgctctg
cacagtaatcagatcctcaccgtcaagggggaccaaggacaagctggaccccctggacct
ccagggccaccaggacccagaggtcccccaggagatactgggaaagatggtcctcgaggg
atgcctggcattccgggtgagccaggaaagccaggtgaacaagggttggcaggacctcaa
gggcctccaggacaaaagggttctgttggagtgcctggtgttcctgggaaagatggacaa
atgggagaacctggtttgcctggcatagcgggggagaagggagcagcggggcttaagggt
gaccctggagaaagaggagaaaagggtgatgctggagaaaatggaccaaagggtgacaca
ggagaaaagggtgaccctggttcatctgctgcaggaattaagggtgaacctggtgaatca
ggacggcccggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggata
aagggtgaaccaggcttcattggtccacagggagaacccgggctgccagggttaccagga
acaaagggtgacagaggagaggcaggccctcctgggaagggtgagcgaggtgaaactgga
cttccaggaccaaaggggagaacaggtgaacctggatctagaggccccaaagggtcaaag
ggtgatacaggtgacagaggtgacacaggatctgcaggtccacgggggccacctggacag
aagggtgatcaaggtgctacagagataattgattataatggcaatattcatgaagctcta
cagaggattgccaccctcactgtcacgggaccaccaggaccaccgggacctcaagggctg
caaggtccaaagggtgaaccaggatccccaggaattcctggagttgatggggaacagggt
cctaaaggactaaaaggagatatgggtgaacctggaatgcatggagaaaagggaggaatt
ggactacctggattgccaggagccaatggcatgaagggtgaaaaaggagatgctggtttg
cctggtgcccaaggcccttcgatcataggacctcctggacctccagggccacatggtcct
ccgggccctatgggacctcatggcttgcctggcccaaagggtgaaccagggttaaatggt
cttaaaggattgaagggtgaacaaggtcaaaagggtgacagagggccccttggtcttcca
caccacttactaatctcacgttcttgtcacccgtgtcgtacccatcatccatgcttccac
ctaaccacacagggagcatctggcttagacggaaagccaggaccccggggtatagatggc
ccagttggtccccatggccctgcaggccctaaaggagacagaggtgaaaagggaactgta
ggtgaccctggacccagaggaccctatggcttgcctggcaaggatggcgagcctggcctt
gatggtttccctggtcctcgaggagaaaagggtgaaataggagaaaagggagaaaagggg
gaaaagggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgctcct
ggattagatgcaccttgcccattgggtcctgatggattaccaatgcctggctgttggcaa
aagggagtcacaccatggcttattgctaaaaagagataa
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