Lagopus muta (rock ptarmigan): 125692683
Help
Entry
125692683 CDS
T09141
Symbol
SH3TC1
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125692683 (SH3TC1)
Membrane trafficking [BR:
lmut04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
125692683 (SH3TC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_1
TPR_2
SH3_2
TPR_10
SH3_1
ARM_TT21_4th
TPR_7
TPR_19
Csd3_N
Motif
Other DBs
NCBI-GeneID:
125692683
NCBI-ProteinID:
XP_048799469
LinkDB
All DBs
Position
4:60956380..60983219
Genome browser
AA seq
1339 aa
AA seq
DB search
MSSSAAGGSVSVLSSKATMEVGIPAPSLEGKQDSNLERKETEQGRCVPGWICEATSAKVS
AARGGDKTDALQEQMDYPQNEKCMNVSSRTLLGQAENFPTDISLKLTMVRRKNGCPDPRL
QRQLRGQLRLLENDSREVTAVFSELSARLLSIHSDQDLIVVTFKTFEEIWKFRTYYSLGF
VNHCMENLFLDQSFWLYSQEEEETGIEVCINEKSLNLMYRSLLVQEGAFFVLCPDNMVRK
IMATDCKINTYFEAGTLTAGVADGSVDGDMTMLSDVSLEPLIPFHQWFLKVYSDPIDVTY
KTESKSIRQLATGSCLAVMNYDSAVPEEISFQEGDKIEILGYLIECMEWFVGRHLFTGHV
GFVKTSHVKLDLPGNKVDLDFLKAEELSFFPKEKNVEEVIHLLKQTSITDVCSVYRIDQL
EEQEFQKTCECEILCPYSNMVTASKKNGKIEEFVEKFKKLQVTQAEGPATEGKDSASSSH
KEIFPSPEGPCFYIYQDNGQESDVFESLLLFLNSKEYESDFKNLYDFSYPFINSMFYGFS
EEDELLSFFSLARELAKKAGMSWALARLCFLLGRLSVKKVKFSQARVYFEEALGAVAGGF
SDLYFIIALYTNLTVIYLTQKNKEKCSHVFDKATSLLMGIPNHICSADMESDILKHALKR
TILSQNKHAEARACFLLAKHYTARKQHEEALPFLERLQLLSNDLGLQNNLSKNCYFKLAE
SYDEKCLPHIVLSCIKVSSSQNSSTLMDSLKRIDLVIRNAPKLYGLRKLRQILPSQIAPY
LTQALSSAFTNEHQGLCSTIYLSLAKLYSHHKQYEKAIVYMMKALDSDTSAKPEETINYL
VSLAWLYVLYRQYDVAATILNAVVDSSWSNPQQLGVAYNMLAIALKRTNNTKKAAESCYK
ALRLSEEANMTHNQAISMANFGELCLHAAASKLAEHYYIKAVKLFAKLPSVDCGQEFIQT
LLQLGRYYVSRTQREKGRFYYEWAFLIAMEISHLESQLQAIKLLCQFYSTVVPNEAQCVI
YNEYQLSLARKMSNKVLEGQILETISQLYLSLGTERAYRSALEYTKRSLGIFIDLQKKER
EAYAWLRAGKIYYILRQNELVDLYIQVAQDAALCTGDPNLTMELFEAAGDIFFNGKWEKE
KAVPFYRDRALPLAVETGNKNTELRLCNKLVELLVNLKVYEESMEYAKTSLMLSVNLGNQ
LNERVAYHRLAAIHHHLGHCELAEHFYLKALSLCSSPLEFEEETLYYVKVYLNLGDIIFY
DLKDPFDAAGYYQLALAAAMDLGNKKAQLKIYTRLAIIYHNFLVDREMSLFFYQKARTFA
TELNVRRINLAPDQCYKSL
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttctgcagctggaggcagtgtgtctgtgctcagctctaaagccaccatggag
gtggggatccctgctcctagtctagagggaaagcaagacagcaaccttgagaggaaagaa
acagagcagggaaggtgtgtgcctggctggatatgcgaggcaaccagtgctaaagtgagc
gctgccaggggcggagacaagacagacgcactgcaagaacaaatggattatccacaaaat
gaaaaatgtatgaatgtcagttccagaaccctacttggtcaagctgagaattttccaact
gatatctccttgaagctaacgatggtgagacgcaagaatggatgtcctgatcccagactc
cagaggcagctcagaggacagctccgtcttctggaaaatgacagcagggaagtcacagca
gttttcagtgagctctctgctagattgctctctattcacagtgatcaagatctaatagtg
gtaacatttaaaacttttgaagaaatatggaagtttcgaacttactactcattgggtttt
gtaaatcactgcatggaaaacttattcctagatcaatctttctggctgtattctcaagag
gaggaagaaacaggcattgaagtttgtataaatgaaaaatcattaaatttaatgtacaga
agtctgctagtacaagaaggggcattttttgttctatgtcctgacaatatggtaagaaaa
ataatggctacagactgcaaaataaacacttactttgaggctgggactcttactgctggt
gtagcagatggatctgtggatggtgacatgactatgctgtctgatgtttctctggagcct
ttgatcccttttcatcagtggtttcttaaagtatattctgatcccatcgatgttacatac
aaaactgaatctaaatccatcagacaacttgcaacaggatcctgtctagctgtgatgaat
tatgatagtgctgtgcctgaagagattagtttccaggaaggggacaaaattgagatcctt
ggctatttaattgaatgcatggaatggtttgttggaagacatttgtttactggccacgta
ggctttgtaaagacaagtcacgttaagctggatttacctggaaataaagtggacctggat
tttcttaaagcagaagagttatctttctttccaaaagaaaaaaatgttgaagaagtgata
catttgttgaaacaaacctctataacagatgtttgttctgtgtatagaatagaccaatta
gaagaacaagaatttcagaaaacgtgtgaatgtgaaattctatgtccatattctaacatg
gtgaccgccagcaagaagaatggcaagatagaagaatttgtggagaagttcaagaaatta
caggtcacacaggcagaagggccagctacagaaggaaaggattctgccagctcttcacat
aaggaaatctttccttcacccgaaggaccttgcttctacatatatcaagataatggtcaa
gaatctgatgtctttgagtcattgttgctcttcttaaatagcaaagagtatgagagtgat
ttcaaaaacctgtatgatttctcttatccattcattaatagcatgttttatggtttttca
gaggaagatgaactactcagtttttttagcttagcaagggaattagcaaagaaagcaggt
atgtcatgggcactagcaaggctctgctttctcttaggcaggctgagtgttaaaaaagtg
aagttttcccaagctcgggtttattttgaggaagctcttggagcagtagctggaggattt
agcgatttgtactttataattgctctttacacaaatctaacagtcatctacttgacacag
aagaacaaagaaaaatgttctcatgtttttgacaaggctacatctcttctcatgggaatt
cccaaccacatttgcagtgctgacatggagtcagatattctaaagcatgctctgaagagg
acgattttaagccagaacaaacatgcagaggctagggcatgctttttactggcaaaacac
tacactgcacgcaaacaacatgaagaggcacttcccttcttagaaaggctgcaactgttg
tctaatgacttgggtttacagaacaacttatctaaaaactgttatttcaaactagcagag
tcctacgatgagaagtgtttgccacacattgtgttaagctgcataaaagtctcctcttcc
cagaactcaagtactctaatggattccctgaaaaggattgatttggtcatcagaaatgct
cccaaactctatggcttgagaaaactcagacaaatacttccatcccaaattgcaccttac
ctcacacaagcactttcctctgcatttacaaatgagcatcaaggactatgcagcaccatc
tatcttagtttagcaaaactgtacagccaccacaaacagtatgaaaaagccatcgtttac
atgatgaaagccctggactctgatacttctgctaagccagaggaaactattaactacttg
gtttcacttgcttggctatatgttctttacaggcagtatgatgtggcagcaaccatttta
aatgctgttgtggactcctcgtggagcaatcctcaacagctaggtgttgcttataacatg
cttgctattgctttgaaaagaacaaacaacaccaagaaagctgctgaaagctgctacaaa
gctctgcgtctttctgaagaagccaatatgactcataaccaagctatctccatggctaat
tttggagaactctgtctacatgcagcagccagtaagctggcagagcattattatatcaaa
gcagtgaagctatttgccaaacttccaagtgtggactgtggtcaagagtttattcaaact
ctccttcagttgggacgttattatgttagtagaactcaaagagaaaaaggaaggttttat
tatgaatgggcatttttaattgcaatggagataagtcatctggaaagtcaacttcaagca
attaaactgctgtgtcagttctacagtacagtcgttcccaatgaggctcagtgtgtcatc
tacaatgagtatcaactatctttagctagaaagatgtccaataaagttctggagggacaa
attttggaaaccattagtcagctctatttgtctttaggaacagaaagggcttacagatca
gctcttgaatataccaaaagaagccttggaatatttatagatctccagaaaaaagagaga
gaggcatatgcttggctacgggcaggaaaaatatattatattctgaggcagaatgagctt
gtggatctctatattcaggttgctcaagatgctgctctatgcacaggagatccaaactta
acaatggaattgtttgaagctgctggagacatattttttaatggtaaatgggaaaaggag
aaagcagtgcctttctacagggacagggctcttccccttgctgttgagactggcaacaaa
aacactgaactcagattatgcaataaactggtggagttgctggtgaatctaaaggtttac
gaggaaagtatggaatatgcaaaaacatctcttatgctcagtgtaaatttaggaaatcag
ctaaatgaacgagtagcttaccatcggctggctgccatccatcatcatttgggtcactgt
gaactagctgaacacttttatttaaaggctttgtccctctgttcctctcctctggagttt
gaggaggaaactctgtactacgtcaaggtgtatttgaatttaggagacattatattctat
gatcttaaggatccctttgatgctgcaggctattaccaattggctctcgctgctgccatg
gacttgggcaataagaaagctcaactgaagatttacacaagacttgcaataatctaccac
aacttccttgtggatcgggaaatgtctctcttcttctatcaaaaggcaagaacctttgca
acagagctgaatgttagaagaataaatctagctcctgatcagtgttataagagtttataa
DBGET
integrated database retrieval system
