Lagopus muta (rock ptarmigan): 125692713
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Entry
125692713 CDS
T09141
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmut03036
]
125692713 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lmut03037
]
125692713 (ALMS1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
125692713 (ALMS1)
Cilium and associated proteins [BR:
lmut03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
125692713 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
125692713
NCBI-ProteinID:
XP_048799559
LinkDB
All DBs
Position
4:complement(69554461..69603905)
Genome browser
AA seq
2882 aa
AA seq
DB search
MEPGEEVEDEEEEEQRVPPIATTPPRRTWREESLSQSSSETQASAASGISLGEAIRQRTA
AHQEIDSWYQLPAEVDASRLTAASETKLGLASDRNDLTEFPTLEEGMLPSAETSRRQHPE
DTMHGLLLGMQDSQFSPCLPLLMYSTPGQRILDETLFQQSERDFIHLRGVPDVSGASEQH
SDPLHIPEAAWLTDVDAPSDCCSLSQHPLSFQQAEPSDASYLSQQTSRSSEPLMNKEASE
DCKNDINERASIPQMGDKAVNQMEASLVKQTCVTSTEDDCFICDNNVLAPVFELSEKEKE
LLRRDEFSSSENSSCKTALTKNSGKGEREMQMEKVKMAESESEGCLRHPERLEKEKVPEL
GSSQALSDDLKKDSGKSSGTQDVFSAKTSEIAGESRGRRVDLSDFGSMKFVAVPNEVQGA
FLDREEKQGLREEELSPIVPSTSDSAPKQPVVTSMESPPSCSENAQVEMEPGVHKAELTI
SDVSIERGHKVTDISPSLNCIVDDGSFFRHFSHPSYQSTPGILLNKNVRAEVGARVIKSD
VRASPLCLNEDNSGKSSTSTPTSVEKQRSLQCAQKENNKHLDSLKLRYPHTGRIQSLPSL
NFMEKVGTWNLSQPKNMPDVLALSDQGVISHRKKAYSAIASSANNILSMQNSSRNPEDYI
AAPSGGTHSLENIHFHDKISEPVHPLPRSQSDNSVNVASRNNSQTDVVQPVNTEAMQPLE
EKSNVSGVPENKLGGSLIHQLTAEIASGSVDKGSSVEQTSYPDAFISSERVARLIKEDGN
SPTGEQEKWDGLENPKLPRNLDVGHVGVDNCGDISPDSLNLPAAHSGESSHRASGSPGCS
SVVSKHFFTSAEDDNFISVRATAVLETPEKGELNIEERIPIYLRNLGIDQSPGTILTPFV
PRGPMREVEFSPSDLRTLKGSTDTLTRTIQQPPGELLAAVDVTQTSFNSGTSTVSISIPM
NSETGSDTFSPRELSPRFSLPFGEKPMSQCTVSCHKVEVTAPRSMQVETECSAVSKLAEP
SQHLQTVSLDCHSNRESPVLVAKSVQDLLAKKEWKDVNGSSQRWTVSSLAGVQDEKERGS
QTSSAGSEKNEGQESDSVIGSRALQEIRKLLAEAESIAGSWPDPVFSNASSRETESSPVQ
IEKEDGTKDSDLVKDRVPQFQKVVSWAESMKQSSIQEGSIPKPLNSCKDDLKWECSFDAS
LCSCEGVVEMTEEFRTGKSVGRSEPEGCSSVTTDRNQPAVVAVARSSANSELSTERPSEL
ENPSPSEPRGSVINVPGSFQNELSKANVAVSTAGGIQQSSGSSSGDSLAARVKNLLGNPL
MPVGSTADISGGFQSMMSKTSAAGSKAEGVQESDGSSSGDSLVARVKNLLGNPSETSGST
TNVPGGFQSMLSKTSAAGSKAGGVQESDGSSSADSLSARVKSLLRNGSSLVPATPILRSD
DEEERKARAWVKLKLASRSEEAALDLNEEDRQRIEEIKAELLLSAKRSGQAKGKWSYISE
ATSLYSCNQEADKEHSRASSDKRFHSDSHTQALGTKEILKPSLQHVVPLYRAELSDCCSL
KNTQLKSLSTAEPPTCRQVASSHSGCVGLHLPLQKQQDTRVRSFTAASDAQTEKVPSPAQ
KQLSFPECSEEMSKQITSITFSSRRRFQSPLTSVVLDGFFSGDDLDEIMPLETDSATAEE
QSHGKKHWERSEICPPSSPALAGSPSDEIAFPADKDTIRDVSPDGNRDGAYQETDCLSDR
KSVAVYADERQTPSAKNLDALSQDVTELGRHGARLLGLDCDRKFSQGMKGLHEPHSISSY
QQEKSSPTSHVQLCESLEGSDPATQTDLPKDRGKLLEEEKSPSDAVPLIQKEVAGEQTGA
SQHSSPDEILSTTSPSSPIKKVLSCVHITLSPKCNNSEPHRDLNTESEMRLGDKLEVNSQ
PVPLKSPKTLLEAVSKLPTAELIPEDQRCSSFPVPSAEPCLAFSSVPSTAGQEVPLHGSE
KLQAVNSGGCSLKNICNCTDPAKSRKSTSDATTQITESPGKTTFSAEIYVNSQDPESSAH
RSSIQKAKEFPQNTTSSLNRTSSFPRQGAGQPLLLPYKPSGSTEMYYVPYQKTGAKISSL
GSEKSGSNDALPSGLPADVLGVQDDKPPGTTAIKHKEGVCCKRAKPKLAWAEEQMTAQEG
APEGSHHLKSVNTTQSVFKSAQFYLHHPVPLLSHSELSEDSSGVGHTGISSSTVLQNWRK
AHRQRCVLSAHRKKDGDREFFPLVAEADHSKNEDLNIDTSLSNETPREELLQRGGREAEQ
MAARSQTSHLCENVVKDLPVRQRTHSAGSLDELWVQFLERQKRYQQQDFRRKGELSLVER
LDRLARVLQNPIRYTLTPAKPERNASEKPREVKEQEKTRVLEKSVPESTLEPHAARVKGR
PRISCRERSFVELRKNRSGEKVPCHTNEISEHQQYLDTSSDTCSERRLSKELCTTISSTI
SESDAVTQTDIETTTQTEVSSSVSTIDTARLVRAFGHRRVQLSPRLSQLYCTIHQQKSRS
EKWEEEGSGARGVEHPKVTSERHRKQKETQKALDQALTSSGSWGPSSALSNKRRARMLNK
GIQAGDLEIVNGATKKNTRDVGVTFPTPRSIQSNQRPRDPWHRVGGIFGESDGMVTDHQA
AGSKGKQKGQPGSFFMEKRTKRSRLHLPQQGISWFVQAEDLRFESRKENCSNSIPGPGSS
WFEPFTTTKPWREPLREKNFQEQQCSKVTQLAAPERDAETRPIQPLVKLTLQEALAVHRP
DFISRSGERVKHLKLLMEERRMQSVLQSEPEELFNPPEKRKGYRNASHVLADRGYLIKEK
RRAIPKSEMVQRSKRIYEQLPEVQKKREEEKRKSEYNSYRLKAQLYKMKITNRVLGRKVA
WN
NT seq
8649 nt
NT seq
+upstream
nt +downstream
nt
atggagccgggagaggaggtggaggatgaggaggaggaggagcagcgggttcctcctatt
gcaacaactccgccacgccgcacttggagggaggaatccttaagccaaagcagcagtgag
acccaggcctcagctgccagcgggatctccctgggagaagcaatacgtcagagaacggct
gctcatcaggaaattgactcatggtatcagcttccagcagaggtggatgccagccgttta
actgctgcctcagagacaaagcttggcctggcttctgataggaatgacctgactgagttc
cctaccctggaggaaggaatgttgccttcagcagaaacatcgagaaggcagcatcctgaa
gatacaatgcatggcttgctgctgggtatgcaggacagtcaattctctccctgtcttcca
ttgctgatgtattcaacaccaggccaaaggattttggatgagacgcttttccagcaatca
gaaagggatttcattcatttaagaggagttcctgatgtttctggtgcttccgagcagcat
tcagatcctttgcacatcccagaagctgcctggctgacagatgttgatgctcccagtgac
tgctgctccttgtcccagcatcccctttcattccagcaggcagaacctagtgatgccagc
tatttgtctcagcaaacctctcgttcttctgaaccacttatgaacaaggaggcgagtgaa
gactgcaaaaatgatattaatgagagggcatcgatcccccagatgggtgacaaagcagtg
aaccaaatggaagcttcacttgtaaagcagacctgtgttacttctacagaagatgactgt
ttcatttgtgacaacaatgtgctggctccagtttttgagctttcagagaaagaaaaagag
ttactgaggcgtgatgagttctcatcttctgaaaactcctcttgtaaaacagctttgaca
aagaattcaggaaaaggtgaaagagagatgcaaatggaaaaggtaaaaatggctgagagt
gagtcagaagggtgcctgagacatccagagaggctggaaaaagaaaaagttcctgagctt
ggttcttctcaggcattatctgatgatttgaagaaagacagtggtaaaagttcaggtaca
caggatgtgttttctgcaaagacttcagaaattgctggagagtccagggggcgccgagtg
gatttgagtgactttggaagcatgaagtttgtagctgttcctaatgaagtccagggagct
ttcctggatcgtgaggagaagcaaggtttgagagaggaggagttgagccccattgtgcca
agcaccagtgatagtgcccccaaacaaccagtcgtgaccagcatggaatctcctccttcc
tgcagtgagaatgcccaagtggaaatggagcctggagttcacaaggctgaattaactatt
tcagatgtttccatagaaaggggacataaagttacagacatttccccttcgcttaattgc
attgtagatgatggctcgttctttagacacttctcccatccaagctatcagtctactcca
gggatactgttaaacaaaaatgtcagggcagaagtgggtgctcgtgtgatcaaatcagat
gttcgagcctctcctttatgcctaaacgaagacaattctgggaagtcatctaccagtaca
cctacatctgttgagaagcaacgttctctccagtgtgcccaaaaagaaaacaacaagcac
ttggactccttaaaactgagatatcctcacactggaagaattcagtcactcccatccctt
aatttcatggagaaggtgggcacttggaatctgagccagccaaagaatatgcctgatgtg
ctggctttaagtgaccagggtgtaatttcacataggaagaaagcctacagtgcaattgcc
agttctgcaaacaatattttgtcaatgcaaaatagcagcagaaaccctgaagattatatt
gctgctccttctggagggacgcattccctggaaaacattcattttcatgataaaatctca
gagcctgtccaccctcttcctaggtctcagtctgacaactcagtaaatgttgcaagtagg
aacaactcccagactgatgttgttcaaccagttaatacagaagcaatgcagcctctagaa
gaaaaaagtaatgtttcaggagtgcctgaaaataaattaggaggctccttgatacaccag
cttacagctgagattgcttctgggtctgttgataaaggtagcagtgtggagcaaacttca
tatccggatgctttcatttccagtgaaagagttgctcgcctcatcaaagaggatggaaac
tctccaactggtgagcaggaaaaatgggatggtcttgaaaatccaaaactgcctcgtaac
ttagatgttggtcacgtcggcgtggacaactgtggtgatatttccccagatagtctgaat
cttcctgctgctcattctggggaaagcagccatcgggcctcgggctccccaggctgttct
tcagtggtttccaagcacttcttcaccagtgcagaagatgacaacttcatctctgtcaga
gcgactgctgttctggagactccagagaaaggagagcttaatattgaagaaaggatcccc
atctaccttcgcaaccttggcatcgaccagtcgcctgggaccatactgactccttttgta
ccccgaggaccaatgagggaagttgaattttccccttcagatctcaggacactgaagggc
tccactgacacactgacaaggaccattcagcagccaccaggcgagttgctggcagcggtt
gatgttacacagacgagtttcaactctggcacttccactgtcagcatttctattccaatg
aattcggaaactggttctgatactttctcacccagagaactctctccccgcttctcgtta
ccttttggagaaaaacccatgagtcagtgcactgtgtcgtgccacaaagtagaggtaact
gctcctcgttccatgcaagtggagacagaatgttcagctgtctccaaactagctgagcca
agccagcacctgcagactgtttcacttgattgccattcgaacagagagagccccgtgctt
gttgcaaaaagtgttcaggatctgctagctaaaaaggaatggaaagatgtgaatggaagc
tcacagagatggactgtcagttctttggctggagttcaagatgaaaaggagagaggatca
caaacttcaagtgcagggagtgagaaaaatgagggtcaagaaagtgattctgtgattgga
tctcgtgcattgcaagaaatacgtaaacttctggcagaggcagagagcatagctggcagc
tggcctgaccctgtcttttccaatgcatcttctagagaaactgagtcttctccagtgcag
attgaaaaggaggatggcaccaaggattctgacttagtgaaagacagagtccctcagttt
cagaaggtcgtgtcatgggctgagagtatgaagcaaagcagtatccaagagggatcaatt
ccaaagcctctgaattcttgcaaagatgatttaaaatgggaatgttcttttgatgccagt
ttgtgcagttgtgaaggtgtggtggagatgactgaagagtttaggacaggaaaatctgta
ggaaggtctgagccagaaggctgtagcagtgtaactacagacagaaaccagcctgctgtt
gtggctgttgcacgaagcagtgcaaatagtgagctcagcactgaaaggccttcagagttg
gagaatccctctccatcagagcctcgaggaagtgtcatcaatgtgccaggaagcttccag
aacgagttatctaaagctaatgttgctgtaagcacggcaggaggcatacaacaaagcagt
ggcagtagcagtggagattcattagctgcccgtgtgaaaaaccttctggggaatcctttg
atgcctgtaggcagcactgctgatatctcaggaggcttccaaagcatgatgtcaaaaaca
agtgcagctggaagcaaagcagaaggcgtgcaagagagtgatggcagtagcagtggggac
tcactggttgcccgtgtcaaaaacctgctggggaatccttcagagacttcaggcagcacc
accaatgtcccaggaggcttccagagcatgttgtcaaaaacaagtgcagctggaagcaag
gcaggaggcgtgcaagagagcgatggcagtagcagtgcagactctctgtctgcccgtgtc
aaaagccttctgagaaatggatcatctctagtgcctgcaacaccaattctgaggagtgat
gatgaagaggagaggaaagcacgagcatgggtgaaactaaagctggccagccgatctgag
gaagctgcgttggacttgaatgaagaggaccgacaaaggatagaggaaataaaggcagaa
ctgctgctgagtgccaagagatctggacaagccaagggtaaatggagttacatttcagaa
gctacttctctgtatagctgtaatcaggaagcagacaaagagcattccagagcttcaagt
gacaagagatttcattctgacagccacacacaagccttggggactaaggagattttaaag
ccaagcttacaacatgttgtgccattgtatagagctgaactttcagactgttgttcactg
aagaatacccagcttaaatccttaagtactgcagaacctcctacctgcaggcaggttgca
agtagccattctggctgtgttggccttcatctgccactgcagaagcagcaggacacacgt
gtgaggagctttacggctgcttctgatgcacagacagaaaaagtcccttcaccagcacag
aagcagctgtcttttccagagtgctctgaagagatgtcaaagcaaattacatccatcacc
ttttcatcccgaaggcgttttcaatcaccgttgacttccgtggtactcgatggctttttt
agtggagatgatcttgatgagataatgcctttggagacggattcagccactgctgaggaa
cagagccatggcaaaaagcactgggagagatctgagatctgtcctccttcaagtccggct
ctggctggctcaccatctgatgaaattgcatttcctgctgacaaagacacgattcgtgat
gtctctcctgacggtaacagagatggagcttatcaagaaacagactgtttgtcagatcgg
aagtctgtagccgtctatgctgatgagagacagactcccagtgcaaaaaatcttgacgct
ctgtctcaagatgtgactgaattgggcaggcatggcgccagacttctggggcttgactgc
gatagaaaattcagtcaagggatgaagggccttcatgagccccattctataagctcttac
caacaggagaaaagcagccctaccagccatgtccaattgtgtgagagcttagaaggttct
gatccagccacacagactgatttgccaaaggaccgtgggaagctgttggaagaagagaaa
agtccttctgatgcagtgcctctcattcagaaagaagttgctggagagcaaactggtgcg
tctcagcattcatctccagatgagattttatccaccacgtctccttcatcaccaattaag
aaagtactgtcttgcgtccacatcactctttccccaaaatgtaataactcggagccgcac
agggacttgaatactgaaagtgagatgagattgggggacaaacttgaagtgaattctcaa
ccagtgcctttaaaatctccaaaaactttattagaagctgtttctaaattacccactgct
gagcttattccagaagatcagagatgctcatctttcccagtgccttcagcagagccctgc
ctggcgttttcctctgttccaagcactgcagggcaggaggtgcctttgcatggcagtgag
aaactgcaggctgtgaattcaggtggttgtagtctgaagaatatctgcaactgcacagat
cctgcaaaaagcaggaaaagcacttctgatgctaccactcagatcacagaaagccctgga
aaaacaaccttctcggcagagatctatgttaattcacaagaccctgaaagttctgcccat
cggtcttcaatccagaaagcaaaagaatttccccaaaatacaacttcatctcttaacagg
acttcctctttcccaaggcagggtgcaggtcagccattactgctgccatataaaccttct
ggaagtaccgagatgtattatgttccttaccaaaaaacaggagctaaaatttcttcactt
ggatcagaaaagagcggatcaaatgatgctcttccctcagggcttccagcagatgtgctt
ggtgtacaggatgataagcctccaggcactacagctatcaagcataaagagggagtctgc
tgtaagagagccaagcccaagcttgcctgggctgaagagcaaatgacagcccaggaaggt
gctccagaaggaagtcatcatttaaagtcagtgaacaccactcagtcagtcttcaagtct
gcacagttctacctccaccatccagtgcccctcttgtcccacagcgagctctcggaggac
tcttctggtgtgggacacactggaatttcctccagcactgtccttcagaattggaggaag
gcacatcgacagagatgtgttttgtctgcccaccggaagaaagatggcgaccgtgaattc
ttcccactcgttgcagaagcagatcacagcaagaacgaggatctaaacatcgatacatct
ttgagtaatgaaaccccaagagaggagttgcttcagcggggcgggagagaagcagaacaa
atggcagctcgtagccaaacgagtcacctttgtgagaatgtagttaaagacctgcctgtg
agacagagaacccactctgctggtagcttagatgagctgtgggttcagtttttggagcgc
cagaagaggtaccagcagcaggattttcggcgtaaaggtgagctgagccttgttgaacgt
ctcgatcgattagccagggtccttcagaaccccatcaggtatacactgacaccagcaaaa
ccagaaaggaatgcttctgaaaaaccaagagaggtaaaagagcaggagaaaacaagagtg
ctggagaagagcgtgcctgaaagtaccttggagccccatgcagcacgtgttaaagggagg
ccacgtatcagctgtcgtgaaagaagctttgttgagctcaggaaaaataggtcaggagag
aaagttccctgccacactaatgaaatttcagaacaccagcagtatttggacacttctagt
gacacttgctcagagagaaggcttagtaaagaactctgcaccacaatcagttccaccatc
tcagaatcagatgcagtaacacaaacggacatagaaactacgactcagactgaggtgagc
agttctgtttccaccattgacactgccagactggtcagggcttttgggcacagaagagtg
cagctgtcaccaagactctcccagctttattgtaccatccaccagcagaaaagccgctct
gaaaagtgggaggaggaaggcagcggagcgaggggtgtagaacatccaaaggttacttct
gagagacacaggaaacagaaagagacccagaaggcattggatcaagctttgacaagcagt
ggttcctggggaccaagctcagctctcagcaacaagcgacgcgcacggatgttaaacaaa
ggtatccaagcaggagacttggagattgtgaatggtgcaacgaagaaaaacactcgagat
gttggtgtgactttccctaccccaagatccatccagtcaaatcaacggccgcgggatccc
tggcatcgtgtcggtggtatttttggagagtcagatggcatggtcacagatcaccaggca
gcaggaagcaagggtaagcagaagggacagccaggcagttttttcatggagaaaaggaca
aaaaggagcagactgcatttaccacaacaagggatttcatggtttgtccaagcagaggat
ttgaggtttgaatctaggaaagaaaactgttccaattccatccctggtcctggttcatct
tggtttgaacccttcaccaccacgaagccctggagagagcctctgagagagaagaacttt
caagagcagcagtgcagcaaagtgactcagcttgcagctccagaaagagatgctgagacc
aggcccatccagccactggtgaagcttacgctgcaggaggctcttgcagtgcatcgcccc
gatttcatctcccgctccggtgagcgcgtgaagcacctgaagcttttaatggaggagagg
agaatgcagagcgtgctgcagtctgaaccagaagagctttttaatcctccagagaaaagg
aagggctacaggaatgcaagtcatgtgctggctgacagaggttatctgattaaagaaaag
agaagagcaattccaaagagtgagatggttcaaagatctaaacggatctatgagcagctg
ccagaggtgcagaagaagcgagaggaagaaaaaagaaaatctgagtacaactcatatcgc
ctgaaagcacagctgtacaaaatgaaaatcaccaaccgtgtcttagggaggaaggtagcc
tggaactga
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integrated database retrieval system
