Lagopus muta (rock ptarmigan): 125692940
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Entry
125692940 CDS
T09141
Symbol
TNN
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125692940 (TNN)
04518 Integrin signaling
125692940 (TNN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125692940 (TNN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125692940 (TNN)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125692940 (TNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
Fn3_Dep-1_3rd
EGF_TEN
FN3_DSCAM-DSCAML_C
EGF_Teneurin
DUF4998
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Interfer-bind
EGF_2
Fn3_Dep-1_4th
Fn3_VIN3
Ribosomal_L3
DUF7949
EGF_Tenascin
XendoU
TSC22
MerR_2
Ig_ILCR1
Motif
Other DBs
NCBI-GeneID:
125692940
NCBI-ProteinID:
XP_048800097
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All DBs
Position
5:complement(26073527..26097906)
Genome browser
AA seq
1159 aa
AA seq
DB search
MNASFMITFLTSSFLLFESSFAVQGSVLPLKTYWMDFQSWFAFPVGILLCYTLQASAIQL
PASENCTSNGQRISFSHSYKIDLPTSSQIKVEADPLQHEGSSGVQLDPGEAEENEEQDII
FRHNIHVHAPKASCETLAHVKDLLERMEKLEKEVAELREICSPQKCCGGSQGVTQCSGHG
MFLYETCSCKCAEGWEGSDCSRPTCPNLCSGHGHCDGGRCICDEPYFSEDCSQQLCPENC
SGNGICDTAKGVCLCYEEFIGEDCSEKRCPGDCSGNGFCDTGECYCHEGFFGPDCSQVLA
PQNLQLLNATEDSMAVSWDQMIDVDNYLISYYPVGHETLEKQVHVPKEQLSYEITGLHPS
TTYNVTLRHVKKGIASEPVQLQATTVPSALSAIWVTEEMEYSLEVEWENPPTDVDYYKLK
FRSLVGMDEKQVMVPKSSDPKSRHIMTGLKPGMEYEVTVIPVKDDTEGKPSSVSGRTGID
SPTNVVTDRVTEDTATVSWNKVQAPIDRYMVRYTSADGDTRETEVGSENSIITLLNLKPG
MEYTIHIWAEKGPHRSKKASTRALTEIDSPTKLLTDQVTENAITVSWNKVRALIDRYRVN
YTSADGDTEEREVEKDKNITTLAGLKPGMEYVIHIWAEKGEQQSKKASTEAVTEIDSPTH
LIADQVTEDTVTISWDRVLALIDKYVVNYTSADGDTEEIEVGKNKTATTLVGLKPGTGYV
IYLWAEKGVRQSKRTSTEAVTELDSPKNLVTDQVTEDSATISWDSVRAPIDRYIVSYTSA
DGGTKEIEVGKAESITTLTGLKAGMKYAIHLWAELGSMQSKRASTDALTEIDPPRNLHVS
DVTQTTGVVTWAPPAAQIDGYTLTYQGQNGTSKEVQLGPREQQFVLEGLEQGTKYTVFVM
AYKGDHQSRKTVGTFSTVSFLYPYPADCAQMQQNGNISSGLYTIYLNGNGSRPMQVYCDM
TTDGGGWIVFQRRSSGELDFYKRWKNYVEGFGDPTGEFWLGLDQLHNLTSSSPIHYELRV
DLRTANESAYAVYDFFQVASSRERYRLSVGNYRGNAGDAMTYHNGWKFTTWDRDNDVALS
NCALTHHGAWWYKNCHLANLNGKYGENKHSEGVNWEPWKGHEFSIPFTEMKIRPQSSSNE
SVLARKKRSLPGKTKKITF
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccagctttatgatcacatttcttacatcttctttccttctttttgaaagcagc
tttgcagttcaggggtcagtgcttcctctgaaaacctactggatggatttccagagctgg
tttgccttccctgttgggatactgctatgctatactcttcaggcatctgccattcaactt
cctgcatctgaaaactgcaccagcaatggtcaaagaatatccttcagccattcctacaag
attgacctgcccacatcctcccagattaaggtagaggcggatccattgcagcacgaaggc
agcagtggggtgcagctagatcctggtgaggctgaggaaaatgaagagcaggatatcatc
ttcaggcacaacatccatgtgcatgcacccaaagcgagctgtgaaactctggcccatgtt
aaagatcttcttgagaggatggagaagctagagaaagaagttgcagaactgagagaaatc
tgcagccctcagaagtgctgtgggggaagccagggtgtcacacagtgcagcggtcacggg
atgttcctctatgagacctgcagctgtaagtgtgcagagggctgggagggcagtgactgc
tcccgccccacctgccccaacctctgcagtggccacgggcactgtgatggtgggaggtgt
atctgtgatgagccttatttcagtgaggactgcagccagcagctctgtcctgagaactgc
agcggcaatgggatctgtgacacagctaaaggcgtctgcctgtgctatgaggagttcatc
ggagaggactgcagcgagaaacgatgtcccggggactgcagcggcaatgggttctgtgac
acaggagagtgctactgccatgaggggttctttggccctgactgctcccaggtgcttgct
cctcaaaacttgcagctgctgaatgctacagaggattccatggctgtcagctgggatcaa
atgattgatgtggataattacctcatcagctattacccagtggggcatgagacactggag
aaacaagtccatgtgcccaaagagcagctcagctatgagattacaggtctccatcctagc
accacatacaatgtcacacttcgtcatgtgaagaaggggattgccagtgagcccgtgcaa
ctacaagcaactacagtcccatctgcactcagtgccatctgggtgacggaggagatggag
tattccctggaagtagagtgggagaacccaccaacagatgtggattattacaagttgaaa
ttcagatccctggtgggcatggatgagaagcaggtcatggtgcccaaaagcagtgacccc
aagagcagacacatcatgactggcctaaaacctggcatggagtatgaggttactgtcata
cctgtgaaagatgatacagagggtaaaccatcctcagtgagtggcaggacaggaattgat
agcccaaccaatgtggtgacagatcgagtgacggaggacacagccactgtctcatggaat
aaagttcaggctcccatagacaggtacatggtgagatacacctcagctgatggagacacc
cgggaaacagaggtaggcagtgaaaacagcatcatcaccttattgaatctgaagccaggc
atggaatacaccatccatatttgggcagagaagggaccccacaggagcaagaaagccagc
accagagctctgacagagattgacagccccactaaactgttgactgatcaagtgacagag
aatgcaatcacagtttcctggaacaaagtccgggctttaatagacagatacagagtgaat
tacacctcagctgatggggatacagaggagagagaagtggaaaaagacaagaatatcacc
accttggcaggactgaagccaggcatggagtatgttattcacatctgggcagaaaaggga
gaacaacagagcaagaaggccagcactgaggctgtgacagaaattgacagccccactcac
ctgatagctgatcaagtgacagaggacacagtcaccatctcctgggacagggttctggct
ctcatagataagtatgtggtgaattacacctctgccgatggtgatactgaggagatagaa
gtggggaagaacaagactgccacaactctggtaggactgaaacctggcactggatatgtc
atctacctctgggcagagaagggagtgcggcagagcaagagaaccagcactgaggcagtg
acagaattggacagcccaaagaatctggtaactgaccaagtgacagaagactcagccaca
atctcctgggatagcgtccgagctcccatagataggtatatcgtgagctacacttctgct
gatgggggcaccaaggaaatagaagtggggaaggctgagagcattacaactctgacagga
ctgaaagcaggcatgaagtacgccattcatctctgggcagagctgggaagcatgcagagc
aagagggcaagcactgatgcgctgacagagattgatcctcccaggaacctccatgtatct
gatgtgactcagactactggtgtagttacctgggctcctcctgcagcacagattgatggc
tacactctgacctaccagggtcaaaatggcaccagcaaggaagtgcagctgggtcctagg
gaacaacagtttgtgctggaaggactggaacaaggaacaaagtacactgtgtttgtgatg
gcctataagggagatcaccagagcagaaagacagtcggtaccttctcaacagttagcttc
ctctacccgtaccctgcggactgtgcccagatgcagcagaatggaaacatctccagcggc
ctgtacaccatttatctcaatggcaatggcagcaggcccatgcaggtgtactgtgacatg
accactgatggaggcgggtggatagtgtttcagaggcggagcagtggtgaactggatttc
tacaaacgctggaaaaattatgtggaaggctttggagatcccactggggaattttggctt
ggtcttgaccagctgcacaatctcacaagcagcagccccatccactatgagctgcgggtg
gatctgcggacagccaacgagtctgcctatgctgtctatgacttctttcaggttgcctcg
agcagggagagatacaggctgtccgtggggaattacagaggcaatgctggagatgcaatg
acttaccacaatggctggaagttcacaacgtgggacagagacaatgatgtggctctcagc
aactgtgctctgacgcaccatggtgcgtggtggtacaagaactgccacttggccaacctc
aatgggaaatatggggagaacaagcacagtgagggagtgaattgggagccatggaagggc
catgagttctccatcccttttactgagatgaagattcgtcctcagtcttctagtaatgag
tcagtcttggcaaggaagaagagatctctaccaggaaaaacgaagaagatcacattttaa
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integrated database retrieval system
