Lagopus muta (rock ptarmigan): 125692944
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Entry
125692944 CDS
T09141
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04115
p53 signaling pathway
lmut04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125692944 (COP1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
125692944 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmut04121
]
125692944 (COP1)
Enzymes [BR:
lmut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125692944 (COP1)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125692944 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125692944 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
zf-C3HC4_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
zf-C3HC4_3
zf-RING_5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_4
WD40_RFWD3
RING_XB3-XBAT31
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-rbx1
zf-RING_10
zf_C2H2_10
Sina_RING
zf-RING_11
zf-Nse
Motif
Other DBs
NCBI-GeneID:
125692944
NCBI-ProteinID:
XP_048800131
LinkDB
All DBs
Position
5:25873110..26000133
Genome browser
AA seq
755 aa
AA seq
DB search
MSGSRPPPHPAAPPAAPASSSSSSSSSSSSSSSSAAMAPGSSSSGGAAARPVLVAAAVSG
SGAAAAAGAGLARLAAAARPGGGGSSGGGGAGGGGRKRPLLTPLCNGLLNSYEDKSNDFV
CPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILK
QKQRSEEKRFKLDHSVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAE
SHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQF
EAPSPSHSSIIDSTEYSQPPGFSGSSQAKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTR
MTRVSDDSRTTSQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDY
FAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTV
ILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAK
ANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVS
ASTDSQLKLWNVGKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTL
LTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVSYFVHHLF
KRSNPLLVKSEATDMVQPGVGIRGGHPSCGSMHFK
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagccgcccgccgccgcaccccgccgcgccgcccgccgccccggcctcctcc
tcctcctcctcctcctcctcttcttcttcttcctcctcctctgcggccatggcgcccggt
tcgtcctcttcgggcggcgcggcggcgcggcccgtgctggtggcggccgctgtgtcgggc
tcgggcgcagcggcggcggcgggcgcggggttggcccggctggcggcggcggcgcggccc
ggcggcggcggctcgtctggtggcggcggggcgggaggagggggcaggaagaggccgctg
ctcaccccgctctgcaacgggctgctcaactcctacgaggacaagagcaacgactttgtg
tgtcccatctgctttgatatgattgaagaagcctacatgacaaaatgtggacacagcttc
tgctacaaatgtattcaccagagcttggaagacaacaacagatgtcccaaatgtaattat
gttgtggacaacatagatcatctttatcccaacttcttagttaatgaacttattcttaaa
caaaaacagagatctgaggagaagcgattcaaactggaccattcagtgagtagcaccaat
ggccacaggtggcagataattcaagatttgttgggaactgatcaagacaatcttgacttg
gctaatgtcaacctgatgctggagctgctggtacaaaagaagaagcaattagaagcagag
tcccatgctgcccagctgcagatccttatggaatttctcaaagttgccagaagaaacaaa
cgagagcaactggagcagatccagaaggagctaagtgttctggaagaagatattaaacga
gtagaggaaatgagtggcttgtactccccagtcagtgaggacagtacggtgccgcagttt
gaagctccctcaccttcgcacagtagtattattgactccacggagtacagccagcctcca
ggcttcagtggcagttctcaggccaaaaagcagccatggtataacagcacgctagcctca
cgacggaagcggctcacagctcactttgaggacctagagcagtgctatttttccacaagg
atgacacgtgtctcagatgacagcagaaccacaagccagctggatgaatttcaggagtgt
ctgtccaagttcacacgctacaattctgtccgacccctggcaacgctgtcctacgctagt
gacctctacaatggctccagcatagtctccagtattgagtttgaccgggactgtgactac
tttgccatcgctggggtgacaaagaagattaaagtctatgaatatggtacagtcattcag
gatgcagtggatattcactaccctgagaatgaaatgacctgtaattccaaaatcagctgt
atcagctggagtagttaccacaagaacctgctagccagcagcgactatgaaggcacagtc
atcctatgggatgggttcacgggacaaagatccaaggtctaccaggagcatgagaaaagg
tgctggagtgttgacttcaacttgatggacccaaagctattagcttcaggctctgatgat
gcaaaagtgaagctgtggtctaccaatttggacaactccgtagcaagcattgaagccaag
gcaaacgtgtgttgtgtcaaattcagcccctcttctagataccacctagcctttggctgt
gcagatcactgtgtccactattatgatcttcgcaacactaagcaacccatcatggtgttc
aaagggcatcgcaaggcagtctcctatgcaaagtttgtgagtggggaggaaatagtctct
gcgtcaacagacagtcagctgaagctgtggaacgtagggaaacctcactgcttgcgctcc
ttcaagggccacatcaatgagaagaattttgtagggctggcgtccaacggagactacatt
gcctgtggaagtgaaaataattccctttacctatactataaaggcctctcaaagacactc
ctgacattcaagtttgatacagtcaagagcgtcctggacaaggaccggaaagaagatgac
acaaatgaatttgtgagtgctgtctgctggagggcactaccagatggggagtccaacgtg
ctaattgctgctaacagtcagggtacaattaaggtaagttattttgtgcatcatctcttt
aagcgctcaaatccgttgttagtaaagagtgaggccacagacatggtacagccaggagta
ggcatcagaggaggtcatcccagctgtggaagtatgcattttaaatga
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