Lagopus muta (rock ptarmigan): 125693045
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Entry
125693045 CDS
T09141
Symbol
SHOC2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
lmut
Lagopus muta (rock ptarmigan)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_LRWD1
LRR_9
LRR_5
LRR_13
Motif
Other DBs
NCBI-GeneID:
125693045
NCBI-ProteinID:
XP_048800384
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Position
5:56624106..56692703
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AA seq
582 aa
AA seq
DB search
MSSNLGKEKDCKEKDPKVPSSKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSST
QPGVAFSVDNTIKRPNPATGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHMLPSAVK
ELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNK
LREIPSVVYRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIP
KSLAKCSELDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VSGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatctaggaaaagaaaaggactgtaaagagaaagatccaaaagtcccgtcg
tcaaaagaaagggagaaggaggccaaagcctctggaggatttgggaaagaaagcaaagag
aaggagcccaagaccaaagggaaagatgccaaagatggaaagaaagactccagtagcacg
cagcctggggtagctttttcagtggacaatacgataaaaagacctaatccagccacaggt
acccgcaaaaaatccagcaatgctgaagtgatcaaagagctaaataaatgccgggaagag
aattcaatgcgcttggacttgtccaagaggtctatacacatgcttccatcagctgtcaaa
gagttaacgcagttaacagaactttatttatacagtaacaaactgcagtctctgccagca
gaggtgggctgtcttgtgaacctgatgacactggccctgagtgagaattcactcaccagt
ttgcctgactctcttgataacttgaagaaactgcgcatgcttgacctgcggcataacaaa
ctgagagagattccttcggtggtgtacagactgacttctctcgccactctttacctacgc
tttaatcgtataactactgtggaaaaggatatcaaaaacttgtcaaagctcaccatgctt
agcatacgagagaacaaaatcaagcaactacctgctgaaattggtgagctgtgtaacctc
ataacgctggatgtagcgcacaatcagcttgaacatcttccagaagagattggaagttgc
acgcagatcaccaaccttgacttgcagcacaatgagctcttggacctgccagaaaccata
ggaaatctatccagtttaagtcgtcttggcctgaggtacaataggctgtcagcaattccg
aagtctttagcaaaatgcagtgaacttgatgaactgaacctggagaacaacaatatttct
actttaccagagggtcttttatccagccttgtcaagctgactagtttaacgctggccagg
aactgcttccagtcctatcctgtgggtggcccgtcccagttctccacaatctactctctc
aacatggagcacaaccgcatcaataaaatcccctttggaattttctctagagctaaagta
ttaagtaagctgaacatgaaggacaatcagctgacctctctccccttggactttgggact
tggactagtatggtagaactgaacctagctactaaccaactcacaaagatccctgaggat
gtgtctgggcttgtttctcttgaggttcttatattgtcaaataatctcctaaaaaaactt
ccccatggaattggaaatctccggaaactccgagagctagacctagaggaaaacaaactg
gaatccttgccaaatgaaatagcttacctcaaggatctgcagaaattggttctgactaat
aatcagttgaccacccttcccagaggtatcggtcaccttaccaatctgactcaccttggg
cttggagagaatcttctcacacaccttcctgaggaaattggtacactggagaatctggaa
gaactgtatttgaatgacaaccccaacctgcacagccttccctttgagctggctctttgc
agcaaactgtcaataatgagtattgagaactgcccactcagccaccttccgcctcagatt
gttgcaggaggaccctctttcatcattcagttcctaaagatgcagggaccataccgtgcc
atggtctga
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