Lagopus muta (rock ptarmigan): 125693503
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Entry
125693503 CDS
T09141
Symbol
ZSWIM8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmut04121
]
125693503 (ZSWIM8)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
125693503 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
125693503
NCBI-ProteinID:
XP_048801490
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All DBs
Position
5:complement(46044785..46109835)
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AA seq
1822 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDHFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKMKD
GLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRVRAVKDPLQIGFHLSATVVPPQMMSPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTDQCLNYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAY
PIPGITYSSTDKKNSFCWVKAIQQRSCRLQCAEAACEAGRAHGQEPGGPCLQPGDRLRPS
PQEPAVRPKELTGKRKVVSETPQRVLRRLSAEGDKAVYKTAVGKAKLPVSKGLTSKHSGK
RRMSSEDSSLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDAFEEDGGVYFSEG
PEPSVRSSSTGKKSTKDPVGETGSGDDDLTSADENSGGVSLKPEEVGENGAAGGGDDGEE
EDDYQVYYLNPQEVAKEDDDKAEGGNEEEQDMFAGIKPLEQENRMEILFACAEALYAHGY
SNEACRLTVELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLSKAAFLLTVLS
ERLEYHNLAFRIGMFALELQRPPASTKALEVKLAYQESEIAALLKKIPLVTNEMNTIRGR
AEELREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGCRPPSRNWNNEMPGDEELGFEAA
VAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHK
PQTLSSFYSSSKPTVANQKSPSKHAAQSTAAIQQLPGTSVAQQAGVSPAVQSSPETFVEK
SSQESSQRSPCEPAGESTVLKQEGKVPSRLALGNRGGYNGRCWGSPVRQKKKHTGMASID
SSAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGA
RAKTVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSS
GGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILV
ECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQ
DNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQIVGGTPAQREGATGCSAGGAR
AASEAARGLTDNRVTTEPTTVTVAAAVTAAATVVPVISMGSTMYQQHTMAGPAMAHTHTQ
GLHPYTTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYPQSVHPAFIGAQYPYSVTTPS
LAATAVSFPGVPVPSMTQIAVHPYHSETGLSLSSNVAIGSVHAGSTFPAIQGASLTSLSS
QPNSLVTGGFPAEDEQHSQPVSPQGLHYLHSAYQVGMLALEMLGRRTQSDHPNNFSRSPP
YTEDVKWLLGLAAKLGVNYVHQFCVGAAKGVLNPFVLQDIIMEALQRLNPAHVHNHLRTP
AFHQLVQRCQQVYLQYIHYRLIHLAPADYDDFVNAIRSARSAFCLTPVGMMQFNDILQNL
KRGKQTKDLWQRVSLEMTTFSP
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgtttgcggagtgggaggacggggagaggttctccttcgaggactccgat
cactttgaggaggactccctttgttccttcatctcagaggcagagagcctttgccagaac
tggagaggatggcggaagcaatcggccggacccaattctcccactgtcaaaatgaaagat
gggctggtgatcccattggtggaactgtctgcaaaacaggttgcatttcacattccattt
gaggtcgtggaaaaagtttatcctccagttcctgagcaactacagcttcggattgccttc
tggagtttccctgaaaatgaggaagatattagactgtactcatgtttggctaatggcagt
gcagacgagttccagagaggggagcagctgttccgagtgagggcagtcaaagaccctctc
cagataggtttccatctgagtgccactgtggtacccccgcagatgatgtcacccaaaggt
gcatacaatgtggcagtgatgtttgaccgatgcaggatcacatcgtgcagctgtacctgt
ggtgctggggccaaatggtgcgctcacgtcgtggcgctctgtctcttccggatacacaat
gcatctgcggtatgcttacgagcacctgtttctgagtccttgtctcggctacaaagagac
caattgcaaaaatttgctcagtacctaatcagtgaacttccacaacagattcttccaact
gctcagcgtttgctggatgaactgttatcttctcagtcaactgcaatcaacacagtgtgt
ggagccccagatcccactgctggaccctctgcgtcagatcaaagcacctggtacttagat
gaatctaccctgagtgacaacataaagaaaacccttcataaattctgtgggccctctcct
gttgttttcagtgatgtgaattccatgtatctctcttccacggagcctccggctgctgct
gagtgggcctgccttctgcgtcccctgcgagggagagagcctgagggaatctggaacctc
ctttctattgtgcgggagatgtttaagagacgggatagcaacgctgctcctttgctggag
attctgactgaccagtgtctgaactatgagcagataaccggctggtggtacagtgtgcgg
acgtctgcgtcacacagcagtgctagcgggcacacaggacgcagcaatgggcagtcagaa
gtagctgctcatgcctgtgcaagtatgtgtgatgagatggtggttctttggcggctggct
gtccttgacccaactataagtccacagaggcgcagggacctttgctcccagctcaggcag
tggcagctaaaagtcatagataatgttaagagaggtcagcacaagaaatcactggagaag
ctgttccagggtttcaagccagcagtggaagcctgctacttcaactgggaggaagcttat
cctatccctgggatcacctatagcagcactgacaagaaaaactcattctgttgggtaaaa
gccatccaacagaggagctgccggttgcagtgtgcagaagctgcttgtgaggctgggaga
gcccatggacaggagcctgggggaccatgtctgcaacctggggacaggctgcgtccctca
ccccaggagccagcggttcgtccaaaggaacttactggaaagcgaaaagtcgtctctgaa
acaccacagagagttctgagacgactttcagcagaaggtgataaagctgtgtataagact
gcagtgggcaaagctaagttgccagtgagcaaaggtttgaccagcaagcatagtgggaaa
cgccgcatgagcagtgaagacagctccctggagccggacttagcagagatgagcctggac
gacagcagcttggctctgggtgcagaagccagcaatacgtttagttttacagaaagccca
ctgagcaggagctacagagatgcctttgaggaggatggtggagtgtacttctctgaggga
cctgagcccagtgtcaggagcagttccacaggcaagaaatcaaccaaggatcctgtggga
gagacaggtagtggtgatgatgacctgacttctgcagatgagaacagtggtggtgtgagc
ctgaagccagaagaagtaggagagaatggtgcagcaggtggaggggatgatggagaagag
gaagatgattaccaggtatactatctgaatccacaagaggtagccaaggaagatgatgac
aaagctgaagggggaaatgaagaggaacaggatatgtttgctggtataaagcctctggag
caggagaaccggatggagatcctgtttgcctgtgcagaagccctgtatgcacatggatac
agcaatgaagcatgtcgcttaactgtagaacttgccagggacctattagccaaccctcca
gatctcaaagtggagcagccaccaactaagggcaaaaagaacaaggtatcaaccagcaag
caaacatggatggcaaccaacaccttgtccaaagctgctttcctgctgactgtactgagt
gagcggctggagtaccacaacctggccttccgaataggaatgtttgctctggagctgcag
agaccgcctgcctctacaaaagcactagaggtgaagctggcatatcaggagtctgagatt
gcagccctcttgaagaagattcccttggtcactaatgagatgaatactattcgaggaaga
gctgaagaactgcgagaaggaacactgtgtgattatcgtcctgtcctgcctctcatgttg
gctagctttatatttgatgtcctgtgcactccagtggtttctcctacaggctgtagacct
ccaagtcgcaattggaataatgaaatgcctggagatgaagagcttggttttgaagcagct
gttgctgctcttggcatgaagacaactgtcagcgaagcagaacatcctctgttgtgtgaa
ggcactcgaagggagaaaggagatctggcactagctctgatgattacctacaaggatgat
caatcgaagctgaagaagattttagacaaacttctggatagagagagtcagactcataag
ccacagactctgagttccttctactcttccagcaagcctacagtagcaaaccaaaagtct
ccttccaaacatgctgcccagtccactgcagccatccagcagcttccagggacttcagtt
gctcagcaagctggtgtaagcccagcagttcagagcagtcctgagacttttgtggagaag
agttcacaagagagctctcagaggtccccctgtgagccagctggggaatccactgtcttg
aaacaggaaggaaaggtccccagtcgtctggcccttggaaaccgaggtggatacaacgga
agatgttggggttcacctgtcaggcagaagaagaaacacacaggcatggctagtattgac
agcagtgctcctgaaactacctctgacagttctccaacactcagtcggcgtcccctacgt
gggggatgggcagcaacatcttggggccgaggacaagacagcgacagcatcagtagttct
tcaagtgattcactgggatcttcctcttccagtggcagtaggagagccagtgggggagcc
cgtgcaaaaactgtggaagttggcaggtataaagggaggcggctggaaagccacgctcct
catgtcccaaaccagccttcagaggcagctgcccacttctactttgaattggccaagaca
gtccttatcaaagcaggtggaaacagcagtacctccatcttcacccacccttcctccagt
ggtggacaccagggaccacaccgcaaccttcacctctgcgcctttgagattgggctgtat
gcactagggctgcacaactttgtgtctcccaactggctctctcgaacttactcctcccat
gtctcctggatcacagggcaggccatggagattggtagtgcagccctgaacatcttagtg
gagtgttgggatggacatctgacccccccagaggtggcatcattggcagacagagcctca
cgggccagagactccaacatggtgagggcagctgctgaactggcactcagctgcctgccc
cacgcccatgccctgaatccaaatgagatccagagggctctggtgcagtgcaaggaacag
gacaatctgatgctggaaaaggcctgtatggcagtagaagaggcagccaagggaggtggc
gtttacccagaagttctctttgaagtagctcaccagtggtactggctttatgaacagatt
gttggtgggactccagcccagagagaaggtgccactggctgcagtgccggtggtgcacgg
gctgcgtcagaagcagcacgtgggttgacagacaaccgggtgaccactgagccaaccacc
gtaacagtggcagctgcagtaaccgcagcagcaacggtcgtgccagtaatctctatgggg
tcaaccatgtaccagcagcatacgatggcaggaccggcaatggcgcacacacacacgcag
ggcctccacccttacaccacccttcagactcacattccctgtaatccccagtatattgga
cacactatccagcacatgccacgtccagctgtcttcccagtgcctggctcagcataccca
cagagtgtccatccagcattcataggagcgcagtacccctattcggtaacaacaccatca
ttggcagctactgcagtgtcgttccctggtgtgccagttccatccatgacacagatagca
gtgcatccctaccacagtgaaactggactatcactgtcttccaatgtagcgataggaagt
gtccatgcaggatcaacgttcccagcgattcaaggggcttccttgacatctctgtcctca
cagcccaactcccttgttacaggggggtttcccgccgaggatgagcagcacagtcagcct
gtgagcccccagggtttgcactacctccactccgcataccaagttgggatgctggctctg
gagatgcttggccgaagaactcagagcgatcatcccaacaacttctcccgcagtccaccc
tatacagaggatgtaaaatggctccttggattggctgcaaagctaggtgtaaactacgtg
catcagttttgtgtcggtgcagccaagggagtgctgaacccttttgtgcttcaggatatc
atcatggaagctctacagaggctcaaccctgcacatgtgcacaaccatctgcgcacccca
gccttccaccagctggtgcagaggtgccagcaggtctacttgcagtacatccattaccgg
ctgatccacctcgctccagctgactacgatgattttgtgaatgccatccgcagcgccaga
agcgccttctgcctgactcccgtgggcatgatgcagtttaatgatattctccagaacctg
aagcgcggcaagcagacaaaggatctgtggcaaagggtctctctggaaatgaccaccttc
tcaccgtga
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integrated database retrieval system
