Lagopus muta (rock ptarmigan): 125694102
Help
Entry
125694102 CDS
T09141
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125694102 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125694102 (TAF5)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125694102 (TAF5)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125694102 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
125694102 (TAF5)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125694102 (TAF5)
STAGA complex
125694102 (TAF5)
TFTC complex
125694102 (TAF5)
SAGA complex
125694102 (TAF5)
SLIK complex
125694102 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VPS8_N
VID27
Motif
Other DBs
NCBI-GeneID:
125694102
NCBI-ProteinID:
XP_048802791
LinkDB
All DBs
Position
5:54058557..54069896
Genome browser
AA seq
786 aa
AA seq
DB search
MAAVPEEPAEVAAVKPDPEAGTPPQPPAAPPATAAPPAPSAAAAEGETAGSAGDASSGKP
SAPGPAASSAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGEDLGAAALSPAGAGLP
GAPGGEGDASSSEALLSRVAAAATIAIGGSVAPVASSSPGVAAAAAVPPGKVGGGVVVED
QPDVSAVLSAYNQQGDPTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYLELVYN
QHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY
QLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFF
GLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKRDSVGSKSKKQDPNAPPQNRIPLPELKD
SDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTV
RVWSVTPKKLRSVKAAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPD
RNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWAT
DHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPIHS
LAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNT
VRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAA
GAYSSQ
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtacctgaggagccggcggaggttgccgcggtgaagccggacccggaggcg
gggacgccgccacagccccccgccgctccccccgccaccgccgccccccccgctccgtcg
gccgcggcggcggagggggagacggcggggagcgccggggacgcatcgtccggtaagccc
tcggcaccgggcccggccgcctcttcggcggcgctggaccggcagacgctggtggccgtg
ctgcagttcctgcgtcgcagcaacctccgcgagtccgaagagatcctgcgtcgcgaagct
cgactgctcggcgaggacctcggagccgccgccctcagccccgccggtgccgggctcccg
ggagccccggggggcgaaggggatgccagcagcagcgaggcgctgctcagccgggtcgcc
gccgccgccaccatcgcgataggaggcagcgtcgcccccgtcgcctcttctagcccgggg
gtggcggcagcggccgcagtgccaccggggaaagttggaggaggtgttgttgtggaggat
cagccagatgtgagtgcagtgttgtctgcctacaatcagcagggggaccctacgctgtat
gaggagtattacagcggtttaaaaaacttcattgagtgttccctggactgtcatcgggct
gaactgtctcagctgttttatcctctctttgtgcacatgtacttggagttggtctacaac
caacatgagagtgaagctaagtctttttttgaaagatttcatggggatcaggaatgttat
taccaagatgacctccgtgtgttatctagcttaaccaaaaaggaacatatgaaaggcaat
gaaaccatgctggatttccgaacaagcaagtttgttctgcgtatttcccgtgactcttac
caactcttgaagaggcatcttcaggaaaagcagaacaaccagatctggaacatcgttcag
gaacatctctacattgatatttttgatggaatgcctcgtagtaaacaacagatagatgct
atggttgggagcttggctggggaggcaaaacgagaggcaaataaagcgaaggttttcttt
ggcttattgaaagaaccagagtttgatgtgcctttggatgatgaagatgaagagggagaa
aatgaggaaggaaaaccaaagaagaaaaaacctaaaagagacagtgtggggtcaaaaagt
aaaaaacaagaccctaatgctcctcctcaaaacagaattcctcttcctgaactgaaagac
tcagataaactggataaagtgatgaacatgaaggaagctgccagacgtgtgcgtcttggg
ccagagtgcctgccttccatctgtttctatacgttccttaatgcttatcagggtttaact
gcagtggatattacagatgactctagcatgattgtaggaggctttgctgactctacagtc
agagtgtggtctgtgactccgaaaaagctacgtagtgtgaaagcagcagcagacctcagt
ctgattgacaaagaatcagatgatgtcttggagaggatcatggatgagaaaactgcaagt
gagttgaagattttgtatggtcacagtggacctgtctatggcaccagcttcagtcccgac
aggaactacctgctgtcctgttctgaggatggtactgtcagattgtggagcctccaaaca
ttcacgtgtctggtgggatataaaggacacaactatccagtatgggatacacagttctct
ccttacgggtattactttgtgtcagggggacatgacagagtggctaggctgtgggcgaca
gatcattaccagcctttacggatatttgctggccaccttgcagatgtgacatgtactcga
tttcaccctaactccaactatattgccactggctcagcagacagaactgtacggctctgg
gatgttttaaatgggaattgtgtaagaatattcactggacataagggtccgattcattcg
ttggcattttctcctaatggacgattcctggctactggagcaacagatggcagagttctg
ctgtgggatattggacatggcttgatggtcggagaactgaaagggcacactgacaccatc
tatgcgctccgattcagtagggatggggagattttagcatcaggttcaatggataacaca
gttcggctgtgggatgcagtgaaagcatttgaagatttagaaacggatgactttactaca
gccacgggacacataaacttgcctgaaaactcacaggacttgttactaggtacatacatg
accaaatcaactccagttgtacaccttcattttacacgcaggaacttgctgctcgctgca
ggagcctacagttcacagtag
DBGET
integrated database retrieval system
