Lagopus muta (rock ptarmigan): 125694248
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Entry
125694248 CDS
T09141
Symbol
COL17A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125694248 (COL17A1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
125694248
NCBI-ProteinID:
XP_048803137
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All DBs
Position
5:complement(54599540..54645358)
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AA seq
1545 aa
AA seq
DB search
MDSLTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGIEKRSYTHS
SGYVTSSGSGRLNSSSSGYRQTQSPSSTLTKSPGSTFERKTHVNRHATYEGSSSANSSPE
FPRKEFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRSSS
STLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPPYTWSSTLPAGSSLGGYHNSMGQ
SSSLVNAMSHSTGSVFGVPNNLAPSSHTLNTGLSTSSTVFGVQNNLSPSSSALNATAASA
AYGMKNTSQTNTMNSTGVSASAGGTVLSSQGDDFLRKDCKFLLLEKENAPAKKEMELLVM
TKDSGKVFSASSTGLNGGSFAEDTLKKEKQGLSSYVADTGLKSDTNGGLKSAPTRDKATY
AEIRNGDAGGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVRKLRS
RVDNLEKINHSFLTVNQGNPYLEKDVSKVDFLHGAAPSSTFPFENEESVWLMVKSRLNKE
IERGYFRGERGEPGMKGDMGLQGPKGDRGLPGVPGIPGPAGHQGPEGPKGQKGSMGDPGM
EGPMGQRGREGLPGPRGEPGPPGFGEKGDRGAAGPPGPPGPPGSAGLKGPMGSPGPQGPP
GPPGLQGFRGEAGLPGAKGEKGATGSPGPKGDQGEKGARGMTGEQGSRGIPGPPGEPGAK
GPAGQAGRDGQPGEKGEPGLMGMPGARGPPGPSGDAGEPGLTGPQGPPGLPGNPGRPGAK
GEPGSPGKVISAEGSSTIALPGPPGPPGPMGPTGPPGVPGPIGPAGLPGQQGPRGEKGSA
GEAVIETIRTEVSSLASQMLGDIQGRAGPPGPPGPPGESVQGLPGPRGPPGLPGPSGPPG
RPGSSVSTSETFVSGPPGPPGPPGPKGDQGERGPRGFTGEPGEPGLPGFSSHGGTVTMQG
PPGPPGPPGPKGDAGVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPPGPGGSSSQEIQHYV
TDYLKSDNVRHYLTGAQGPPGPPGPPGILTTADGKSFDFAELATRVMSYMTSSSDHYQSF
ASSVSTTSVLYQELLNLLQREEIRQYLVGPRGPPGPPGPGVDGMSLSLDYDELTRRFISY
LTSSGMSIGLPGPPGPPGSPGISYSELTAYLRNSEFSGLVGPPGPAGPPGPPGIPGSSGT
SLEDISAYLQSVGYSSISGMQGPPGPPGPPGPPGFSGTGLLSYADITHSDEFRSELIQYL
KSDEVRSYISGPPGPPGPRGPPGPKGDSGLVAGSMSSLYHDSLASERSHGGSMGAEGSHG
GSLGTGSSYSSSMSSSRSSYSASMGNDGSYGASLGSDGSFDGLLTAEESHRRSAGPGRSY
SNSFTGSLDYSELARRVSENLQSQGILQDFMSYTGQGPPGPPGPPGPPGISRVFAAYGNV
TEDLMDFFRTHGTVRGPPGEKGERGYPGPKGDPGPMGPPGRQGHGDQKERKARKVNKCMV
AEGKEEVLGFKGRAKSVLHRAPSLAAQRFRVDLHCLTAKMSLPVS
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggattctttaacaaagaaaacgaggcaagatggatcagaagttacagagagacttatt
acagagacagtaactacaagactgacatctttaccacccaaaggagggagcagtagtgga
ctcaagacatcatcccacactggaggaagtggaattgaaaagagatcttacacccatagc
agtggctatgtgacttcaagtggaagtggtagattgaactcatcgtcgtctggctacagg
caaacacagtctcctagctcaactctcaccaaatcacctggctcaacgtttgaaagaaaa
acccatgtcaaccgccatgcaacatatgaagggagctccagtgctaactcttctccagag
ttccccagaaaagagtttgcatctgcctccacacgagggcgaagccaaagtcgagagagt
gaaatacgagtgcggctgcagagcgcatctccctctggcagatggacggagttggatgat
gtcaaacgtttactgaaaggaagtcgatcagccagctgcagcccgactcggtcatcgtca
agtaccctcccaataccaaaaaaagctgtggtggagacaaaaatggttactgagagctct
cagtcagtgtcagggacatatgatacaactatactaaatacagccctccctccgtacaca
tggtcctcaactctgcctgctgggtcttcccttggaggataccacaacagcatgggccag
agctcttccttggtcaatgctatgtctcactctacaggatcagtttttggtgttccaaat
aacctggctcccagcagtcatactctgaacacaggcttgagcacatcctcaacagtgttt
ggagttcaaaacaatctgtcaccaagctcttcagctctgaatgccactgcagcctctgca
gcatatgggatgaagaacacttctcagacaaacaccatgaatagtactggtgtgtctgcc
tcagcaggtggaactgttttgagctcccagggagacgactttctgcgcaaggactgcaag
ttcctgctgctggagaaagagaatgccccagcaaagaaggagatggagctcttagtcatg
accaaggatagcggcaaagtctttagtgcctcttccactgggcttaatggaggatccttt
gcagaagacaccttgaagaaggaaaagcaggggctttcttcttacgtggcagatactggc
ctgaaatcagatacaaatggaggattgaaatcagcgccaacaagggacaaagcaacatat
gcagaaatacgaaatggtgatgcaggtggtgcaattggatcagcaccttcctggtgtccc
tgtggttcctgctgtagctggtggaaatggcttctgggtttgcttctggcatggttgctt
ctccttggattgctctttggactcattgctctggcggaagaagtgagaaagctgagatct
cgtgtggacaacctggaaaaaataaatcacagcttcctgacagttaaccaagggaatccg
tatttagaaaaagacgtttctaaagtggattttcttcatggtgcggcaccatcttcaacc
ttcccttttgaaaatgaagaatcagtttggttgatggtgaagagtagactgaataaggaa
atagaacgaggctacttccgaggggagagaggagaacctggtatgaaaggtgacatggga
ttgcaaggtcccaaaggggatcgagggcttcctggtgtcccaggcattcctggtccagcg
gggcaccaaggaccagaaggaccaaaaggacagaagggcagcatgggtgatcctggcatg
gaaggtcccatgggacaaagaggtcgagaagggctaccagggcctcgaggagagcctggg
ccacctggatttggagaaaaaggagatagaggtgctgcaggtcctcctgggccacctggt
cccccaggttctgctggccttaaaggtccaatgggttctccaggccctcaaggacctcca
ggtcctcctggccttcaaggatttagaggagaagcaggtctcccaggtgctaaaggtgag
aaaggagctactggatccccaggacctaaaggtgatcagggtgagaaaggagctcgtgga
atgacaggtgaacaaggctcaagaggcatacctggtcctccaggagagccaggagctaaa
ggacctgcaggacaagctggccgtgatggacagccaggtgaaaaaggtgaaccaggtctc
atgggaatgccaggagcccgaggccctccaggtccttctggagatgcaggagagccaggt
ctcacaggaccccagggaccaccaggacttccaggcaacccaggcagaccaggggctaaa
ggagaacctggatctccaggcaaagtcataagtgctgagggttcatcaactattgctctg
ccaggcccaccaggtcctccaggaccaatgggccccactggacctcctggtgttccaggt
cctattgggccagctggtctccctggacaacaaggtccacggggtgagaagggatccgca
ggtgaagctgtgatagaaactatcaggacagaagtctcgtcactggcatctcagatgttg
ggagatatacaagggcgagcaggaccaccaggtccccctggaccaccaggtgaatctgtg
cagggacttcctgggcctcgtggtccccctggattgccaggaccttcaggcccaccaggg
agaccaggatcttcagtgtccacctcagaaacatttgtctctggcccacctggtccacca
ggtccaccaggcccgaagggagaccaaggtgaacgaggtccacgaggattcacaggtgaa
ccaggtgaacctggcctcccaggattctcttcccatggtggtacagtcaccatgcaggga
cctccaggcccaccaggcccaccaggacctaaaggtgatgcaggtgtcccaggcgctcct
ggcatcccaggaacatctcgaggtggatccagacaaatccagggacccccggggcctcct
gggccaccaggtcctcctggcccaggtggaagttcctctcaagagattcagcattatgtc
actgattacctgaaaagtgataacgtaaggcattatttgactggtgcccaaggtcctcca
ggccctccaggcccacctggaatcctcaccactgcagatgggaagagttttgattttgca
gagctggctacccgtgttatgagctatatgacaagctcttcagatcattatcagtcattt
gccagttcagtatcaactacatctgttttgtaccaagaacttttgaacctgctgcagaga
gaagaaattcgtcagtatctagttggacctcggggcccaccaggacctcctggaccagga
gtagatggaatgtctctgtcactggattatgatgagttgaccagacggtttattagctac
ttgacaagttctggtatgagcattggactccctggaccgcctgggcctccaggttcacca
ggcatatcttacagtgaactgacagcatacctgagaaactctgaattcagtggtcttgtc
ggaccccctgggcctgcagggcccccaggacccccaggaatccctggatcatctggcacc
tctctggaggacatctctgcttacctacaaagtgttggatactcttccatctctggcatg
cagggcccacctggccctcctggccctccaggaccaccaggcttctcaggaactggcctc
ctgtcctacgctgacatcacccacagtgatgaattcaggagtgagctgatccagtacctg
aagagtgatgaagttcgaagctacatctcagggcctcctgggccccctgggccacgggga
ccaccaggacccaaaggagatagtggtttggtggctgggtctatgtcttcattgtatcat
gattcgctggcttctgaacggtcgcatggaggatccatgggtgctgagggatcccatgga
ggatcacttggcacaggcagctcttacagcagctccatgagcagcagcaggtcatcatac
agtgcctccatgggcaacgatggctcttatggtgcgtccctgggcagcgatgggtcgttt
gatgggctgctgacagctgaggagtcacacaggagatcagcaggtccaggcagatcttat
agcaactcctttactggatccttggattacagtgagctggctcgacgtgtgtcagagaac
ctacaaagccaaggtatcctccaggacttcatgtcttacactggacaggggcccccaggc
ccgccaggacctcctggacctcctggaataagcagagtctttgcagcctatggcaatgtc
actgaggacctcatggatttcttcagaacacacggtactgtccggggaccacctggtgag
aaaggagagcggggttatcccggccccaaaggtgacccggggccgatgggcccaccagga
cgccaggggcacggggaccaaaaggagagaaaggcgagaaaggtgaacaagtgtatggtg
gcagaaggaaaagaagaagtgttggggtttaagggaagagcaaagtcagttctgcaccgg
gcaccatccctagcagctcaaagatttcgtgtggatcttcactgtcttactgctaaaatg
tccttgccagtcagctaa
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