Lagopus muta (rock ptarmigan): 125694309
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Entry
125694309 CDS
T09141
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmut03009
]
125694309 (IGHMBP2)
03012 Translation factors [BR:
lmut03012
]
125694309 (IGHMBP2)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125694309 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
125694309 (IGHMBP2)
Ribosome biogenesis [BR:
lmut03009
]
Eukaryotic type
Other ribosome biogenesis factors
125694309 (IGHMBP2)
Translation factors [BR:
lmut03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125694309 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Helicase_RecD
Viral_helicase1
ResIII
nSTAND3
AAA_16
DEAD
AAA_22
Flavi_DEAD
UvrD-helicase
AAA_25
SLFN-g3_helicase
IstB_IS21
ABC_tran
AAA
SRP54
NPHP3_N
RuvB_N
Zn_ribbon_3
NTPase_1
DAP3
UvrD_C_2
AAA_33
zf-UDP
cobW
AAA_7
Motif
Other DBs
NCBI-GeneID:
125694309
NCBI-ProteinID:
XP_048803245
LinkDB
All DBs
Position
6:complement(5149351..5186396)
Genome browser
AA seq
985 aa
AA seq
DB search
MAAEAAERQLELLREEREAELAERRAWQENISLKELQRRGVCLLKLQAANQRTGLYGRLL
VTFQPRKYDSDAELPYNSFGPGDIVGLYNSVGQGDLLSTGIVTRVTSRAVTIAFEESRDG
MLSVDHESSYRLLKLANDITYNRIKKALNALKQYHGGPASDLIDVLFFSLDPSPSSETMP
LKLYNDSLDASQREAVSFSLAQKELAIIHGPPGTGKTTTIAEIILQAVQQGLKVLCCAPS
NVAVDNLVEKLAGYKARILRLGHPARLLEPIQQHSLDAVLARSDSAQIVADVRKDIDQAF
AKSQKAQDKGERGHFLSKIKALRKELKEREETAMTAALTHASIVLATNTGASSDGPLKLL
PENYFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHKAAAKGLSLSLME
RVIERYGEKVVKMLTVQYRMHEAIMQWASSEMYGGRLTAHPSVAQHLLKDLPGVTCTEET
TIPLLLIDTAGCGLLELEVEDEQSKGNPGEVQLAGLHIQALVDAGVKARDIAVVAPYNLQ
VDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAIICDSHTVGSQAFLGRLLEHFRQHGQVRTAFEYLDDLVPENYSHRGERQQSTKAP
AAPSPKPQQAAGRKPKATAAKAAPQKQEARCSPSTSRPGRESPGTKADTNKFKAVLEAFL
ESGETQLDFPSSLSPHDRMLVHLLAEEHGLQHVSTGEGRDRYISIRKKELGQAVVAPAVT
PREQQPPPQPQDSSGEAPAPAEPRGRSERSGKVDLKRLHLERFQREKARQEEMAKKEQES
SAGTRGSSSRKKDKSDGKGKTVAKTTADSASEEDIDALISAAVKADNTCGFPRCKASVTT
LGQFCPHCNRRYCLSHHIPEVHGCGDKAKAHARQWISREGVLYPGSSPKDKSLDPAKRAH
LQRRLDKKLSDLTNQRKSKKKGKEK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggcggctgaacggcagctggagctgctgagggaggagcgggaggccgag
ctcgccgagagaagagcatggcaggaaaacatctccttaaaggaactgcagcgcagaggt
gtctgcttactaaaacttcaagctgccaaccagagaaccggcctctacgggcgcctgctt
gtgacatttcagcctagaaaatatgattcagacgccgagctgccctataacagttttggg
cctggtgacattgtgggcctttacaattcagttggccaaggcgatctgctctccactggc
attgtaacacgtgtcacctccagagcagtgaccattgcctttgaggaatctcgagatggc
atgctgagtgtggatcatgagagctcataccgcctgctgaaattagccaacgatatcacc
tacaacaggataaaaaaagctctaaatgcactaaagcagtaccacggtggtccagcctct
gatctgattgatgtcctcttcttttctttggatccaagcccatccagtgaaacaatgcct
ttaaagctctacaatgactcactggatgcatcgcagagggaggctgtttccttctcccta
gcacaaaaggagcttgccatcatccacggaccacctggcacagggaagaccacaacaata
gcagagatcatcttgcaagctgtacagcaaggcctgaaagtcctgtgctgtgccccttcc
aatgttgcagtggataacctggtggaaaaactggctggctacaaagcccgcatcctgcgg
ctcgggcaccctgctcgcctgctggagcccatccagcagcattccttggatgcagtcttg
gctcgcagtgacagtgcccagatagtggcagatgtcaggaaggacattgaccaggccttt
gcaaaatcccaaaaggctcaagataaaggggagcgaggccattttctcagcaagattaag
gcactgagaaaggagctgaaggaacgagaagaaactgccatgactgcagcccttacccat
gccagtatagtccttgctacaaatacaggtgcttcttctgatggcccactgaagctgctg
cctgagaattactttgatctggtggtgatagatgagtgtgcccaagccctggaagccagc
tgctggatacctctgctgaaagctccaaagtgcatcctggctggggaccacaagcagctt
ccccctaccatcatctcccacaaggctgctgccaagggcctttcactcagcttgatggag
cgtgtcatcgagaggtacggggagaaggttgtgaagatgctgacagtgcagtaccggatg
catgaagccatcatgcagtgggcttcctcagagatgtatggtggccggctcactgctcac
ccatccgtagcccagcatctgctcaaggacctgccaggagtcacctgcacagaagagacc
acgattcctttactgctcatagacactgctggctgtggcctgttggagctggaagtggaa
gatgaacagtctaaggggaatccaggagaagtgcagctggctggtttgcacatccaggct
ttggtagatgctggtgtgaaggcgcgagacatcgctgttgtagccccctacaacctccag
gtggatatgttaagagagcacctttgccacaggtaccctgagctagagattaaatcagtt
gatggtttccaaggcagagagaaagaggcagtgatcttgtcattcgtgagatccaacagg
aaaggcgaggtgggctttcttgctgaggaccgacggatcaacgttgcggtgacacgtgcc
cggcgccacgtggccatcatctgcgacagccacacagtgggcagccaggccttcctggga
cggctgctggagcacttcaggcagcacggccaggtgcgcacggcctttgagtacctcgat
gaccttgtccctgaaaactactcccacagaggagagcggcagcagagcacaaaggcccct
gcagcacccagccccaaaccgcagcaagctgcagggaggaagcccaaagcaacagcagct
aaagcagctcctcaaaaacaagaagcacgttgctctcctagcacaagtagacctgggagg
gagagcccggggacaaaagctgacacgaacaaatttaaagctgtgctggaagccttcctg
gagagtggtgagacgcagttggacttcccctcatctctcagtccacacgaccggatgctg
gtccacctcctggccgaggagcatgggctgcagcacgtcagcaccggggagggcagagac
cgctacatcagcattcgcaagaaggagcttggtcaggctgtggttgccccagctgtaacc
cccagggagcagcagccccctcctcagccacaggactctagtggggaagctccagcccct
gctgagccaagaggaagaagtgagcgctcagggaaagtggacctgaaaaggctgcacctg
gagagatttcagagggagaaggccaggcaggaggagatggcaaagaaagagcaagagtcc
agcgctggcactcggggcagcagcagcaggaagaaagacaaaagcgatggcaaaggaaaa
acagtggctaaaaccacagcagacagtgcatcagaggaagatatagacgctctgatttct
gctgccgttaaagctgacaacacctgtggcttcccccgctgcaaagccagtgtcacaacc
ctgggccagttctgcccacactgcaacaggcggtactgcctcagccatcacatcccagag
gttcatggctgcggggacaaggccaaggcacacgctcggcagtggatcagcagggaaggg
gttctgtaccctggaagcagccccaaggacaaatccctggaccctgccaagagagcccat
ctccagcgccgcctggacaagaagctcagcgacctgaccaaccagcgcaagagcaagaag
aaaggcaaggagaagtga
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