Lagopus muta (rock ptarmigan): 125694533
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Entry
125694533 CDS
T09141
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04137
Mitophagy - animal
lmut04140
Autophagy - animal
lmut04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125694533 (HIF1A)
04137 Mitophagy - animal
125694533 (HIF1A)
04148 Efferocytosis
125694533 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125694533 (HIF1A)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125694533 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
125694533
NCBI-ProteinID:
XP_048803873
LinkDB
All DBs
Position
6:complement(53836096..53866809)
Genome browser
AA seq
811 aa
AA seq
DB search
MDSPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFDLTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCNNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPEMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDE
QQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNT
ETLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMANEFKLELVEKLFAI
DTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSGSQNAATITILQQT
QTPSTAADEIKPVAERVDDVKALMVPSSPVHVINDTSSAPASPYSGNRSRTASPIRAGKG
TLEQTEKSCPGAPSLITVTLNKRSTAMDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQQTGDRGGNASLAWKRVKACKTNGHNGVEQKTIILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggacagcccgggcggcgtcaccgacaagaagaggattagttctgaacgcaggaaagag
aagtcaagagatgcagctagatgccgaagaagcaaggaatcagaagtgttctatgaactt
gctcatcagctgccccttccgcacactgtgagtgcccacctcgacaaggcctccattatg
aggctgaccatcagctacctgcgcatgaggaagctgctggatgctggtgagctagagaca
gaagccaaaatggagaaggaactgaactgtttctacttaaaagctcttgatggatttgtt
atggtgctttctgaggatggggacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggactcactcagttcgatttgacggggcacagtgtatttgatttcactcatccatgtgac
catgaagagctgagagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaagag
caaaacacggagcgcagcttcttcctcagaatgaagtgtacactgaccagcaggggaaga
acagtgaatataaagtctgctacgtggaaggtactgcactgcactggacacatacgtgta
tatgacacgtgcaataatcaaactcactgtggctacaagaagcctcccatgacgtgcttg
gtgctgatatgtgaacccattcctcacccatccaacattgaggtccccttggacagtaaa
acgttcctcagtcgtcacagtctcgatatgaaattctcctattgtgatgaaagaattaca
gagctgatgggatacgagccagaggaactcctgggtcgttcaatctatgagtactatcat
gcgctggattctgatcatctgaccaaaacacaccatgatatgttcacaaaagggcaggtg
acaacgggacaatacagaatgcttgctaagcaaggtggctacgtctgggttgaaactcaa
gcaactgttatatacaacactaagaattctcagccacagtgcatagtgtgtgtaaactat
gtgttgagtggaattgttcagaaggacttgatattttcccttggacaaactgagtgtatg
ctgaaaccagtggagtctcctgaaatgaaaatgaccaaaatattcagcaaagatgacctg
gatgataccaacagcctatttgaaaaacttaagcaggaaccagatgctttaactgtgctg
gctccagctgctggagacacaattatctccctagatttcagcagcaatgagtctgatgaa
caacaatgtgatgaagttcctttgtataacgatgtaatgctcccctcatccagtgagaaa
ttgcagaatataaatatggcaatgtccccactgcctgcctctgaaactacaaagccactt
cgtagcaatgctgatcccgcactcaatagagaagttgtatcaaagctggagccaaacaca
gagacactcgaactttcttttaccatgcctcaggtgcaagagcaaccaaccagcccttct
gatgcaagtaccagccaaagttcacctgagcccagtagtcccaatgactattgctttgat
gtggataatgacatggctaatgaattcaaactggaattagtggagaagctctttgcaata
gatacagaagcaaaaaatccattctccactcaggagactgatttagacttggaaatgttg
gctccttacatcccaatggatgatgacttccagctacgctcctttgatcagctatctcca
ctggaaagcagttcttctggctctcaaaatgcagccaccattaccatacttcagcagact
cagacaccatcaactgctgctgatgaaataaaaccagtggcagaacgtgtggatgatgtg
aaagcactaatggttccatcatctcctgtccacgtaataaacgacacgagtagtgcccca
gcatcaccttacagtgggaacaggagtcgaactgcatctccaatcagagcaggaaaagga
acattggaacagacagaaaaatcttgtccaggagcacccagtttgataacagtcacgctg
aacaaaagatctactgcaatggatgaagaactaaatccaaagatgctagctttgcataat
gctcagagaaaacgaaaaatggaacatgatggttcactttttcaggcagttggaattggg
tctttattccagcagacaggtgaccgtggaggaaacgcatcgctggcctggaaacgcgta
aaggcgtgcaaaaccaacggacacaacggagtggagcaaaagacaatcattctactatcg
actgacatagcgagtaaacttctagggcagtcgatggatgagagtggactaccccaactc
acgagttacgattgtgaagtaaatgctcccatacaaggcaacagaaacctgctacagggt
gaagaactgctcagagctctggatcaagttaactga
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