Lagopus muta (rock ptarmigan): 125694915
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Entry
125694915 CDS
T09141
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04140
Autophagy - animal
lmut04142
Lysosome biogenesis
lmut04145
Phagocytosis
lmut04148
Efferocytosis
lmut05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
125694915 (VPS18)
04142 Lysosome biogenesis
125694915 (VPS18)
04140 Autophagy - animal
125694915 (VPS18)
04148 Efferocytosis
125694915 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125694915 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125694915 (VPS18)
Membrane trafficking [BR:
lmut04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125694915 (VPS18)
Hops complex
125694915 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_Vps41
zf-RING_16
Lact-deh-memb
zf-RING_5
zf-RING_11
zf-ANAPC11
zf-RING_UBOX
zf-RING_2
zf_RING_Vps8
Nup54_57_C
aq_1631
STX17_N
DUF5600
zf-rbx1
RBSN_mid
DUF1664
DUF8221
KNOX2
Motif
Other DBs
NCBI-GeneID:
125694915
NCBI-ProteinID:
XP_048804728
LinkDB
All DBs
Position
6:24129800..24144081
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLYRSASVQQSRASVGIPHSGFVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGTETNTGPILVGTAQGQIYEAEISVSEGS
LFGTNPDQYFRLVYTLEEESGSAPVCCLEIERGIEGKFFIIATTRKRLFQFVGKVPEGTE
QQGFGSIFAMHADHLPSFREFPASFGFSEIAFYTPKLRSSPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPSDIDVTVNKPISIVLTQFHFLLLLPDRVMAVCTLNEQVVFQDLFL
EKFGTLTRMIKDPMVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLNNL
KHSEKTQTTLLTTWLTELYLNWLGILEGDPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHHACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKGHHRPKDADTASLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcttccattctggatgagtacgaggactccctgtatcgttccgcctccgtgcagcag
agccgcgccagcgtgggcatcccgcactccggatttgtgaatgcacgactggaaaaggaa
acaccaatatttaacaagcaaaggattgattttgctcctccagagaaaattaacagcttg
gtggtctcctctaaccagctctgtatgagccttggcaaagacacccttctcaggattgat
cttgggaagccagatgaacctaatcaagtggagttgggacgcaaagatgaagccaaagtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctttgaacactagtgaa
tgcctttacctgaacagaagtgttcagaaagtacgagcactctcccgctggaaaggccac
ttgattgaaagcgtgggctggaacaaatttcttggtacagagaccaacactggacctatc
ctggtgggaacagcccaggggcaaatttatgaagctgaaatatctgtcagcgagggaagc
ctcttcggcactaatcctgaccagtacttccgactggtctacactctggaggaggaatcg
ggatctgcacctgtctgctgcttggagattgaacgagggatagaagggaaattttttatt
atagcaaccactcgaaagagacttttccagtttgttggcaaagtgcctgaaggtacagag
cagcaaggctttggctccatatttgctatgcacgctgaccacttgcccagcttcagagag
tttccagccagctttggattcagtgagatagccttttatactccaaaactgcgctccagc
ccacgctcctttgcctggatgatgggaaatggtgttttatatggtacattggattatagc
cgtcccgattcgattttgagtgatgaacgggtctgggtttatccttctgatattgatgta
actgtgaacaagccaatatccattgtgctcacccagttccactttctgttgctgctgcct
gatcgggtgatggctgtatgcacgctgaatgagcaagtggtttttcaagatctgttcttg
gagaagtttggcacgttgacacgcatgatcaaagatcctatggtccagcagatctggatc
cacactgagaaagttgtgttccgctatcatgtccagcgggaatctagagatgtgtggaaa
atgtatatgaatatgaacaaatttgatttagccaaagaatattgtaaagaccgtccagag
tgcctagatattgtgctggcaaaagaagcagaacactgcttccaaaacaagaggtatcta
gacagtgccaagtgttatgcactgactcagaactattttgaggaaattgcccttaagttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaagttaaataaccta
aagcattctgagaagacacagaccactctgctgaccacgtggctaacagagctgtatctg
aactggctaggtatactggaaggagatccctcacagcggaatctctatttggatacacgg
gagaagtttcgcaccttcctgagcagcccgaagaacaaagactgtttatttaataaccgg
gcatctatttatgagcttttggcaagccatggggacacagagcacatggtctattttgca
gtcatcatgcaggactatgagcgagtagtagctcaccactgccagcacgatgagtacgat
gaagctctaaatgtgctgtccaggcacagagatgagaagctgttctacaagttctctccg
gtcctcatccagcatattcccaagaaagtggttgatgcttggatttctatgggctctaga
ctggatgccaggaaccttattccagctcttgttaactatagccagagtgccagtactcag
cagatcaatgaagccattagatacatggagttctgtgtatatcagttggaggaaacccag
caagctattcacaactacctgctgtctctctatgctttgtgtcggccagattcattgctg
tcatacctggaacaagcaggaaccaacccaaacagaatccactatgacctgaagtatgca
ctgcgcctatgtgcagagcatgggcaccatcatgcatgtgtccatatttataaagtgatg
gaattatatgaggaagctgtggatcttgcgttacaggtggatgttgatcttgccaagtcc
tgtgcagatctccctgaagatgatgaggaactccggaagaagctctggttgaagattgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgcctctccagctgt
gccctgctgaagattgaagatgtcctgccattttttccagactttgtcactattgaccat
ttcaaggaggctatctgtaactccctggaggactacaacaagcacattgaggagctgaag
agggagatggaggaagccacgcagagtgccaagagaatccgagaggacatccaggaaatg
agaaataagtatggctctgttgagcctcaggaaaaatgtgctgcttgtgactttcctctt
ctaaaccgcccattttaccttttcctttgtggccacatgtttcattatgactgtcttctt
caagcagtttttccaaaccttcctgcctataagcaggcaaaactggaagatcttcagaag
aagctggcagctaccagtcagccttccaagggccaccatcgtcccaaggatgcagatact
gctagtctggggaaggggcagcagagccgggaacagatcaaagctgacattgatgatatt
gtggcagctgaatgtgtgtactgtggtgagctgatgatccgctccattgacaaacctttt
attgatcctcagaagtacgaagaggagatgcagagctggctgtag
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integrated database retrieval system
