Lagopus muta (rock ptarmigan): 125694925
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Entry
125694925 CDS
T09141
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125694925 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125694925 (CPSF2)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125694925 (CPSF2)
U7-dependent histone pre-mRNA processing factors
125694925 (CPSF2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
125694925
NCBI-ProteinID:
XP_048804760
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Position
6:44428580..44454156
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRTT
PGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDAEEDIDQPTVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEELE
MQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTETGRIGLEGCLCQDFYRIRELLYKQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgaccacgctctccggagtgcaggaggagtctgccctgtgt
tacctgctgcaggtggatgagtttcggtttctgttggactgtggctgggatgagaacttt
tctatggatattattgattccctaaagaagcatgtacaccaagttgatgctgttctcctt
tctcatcctgaccctctacacctcggtgctcttccatatgcagttggaaaaatgggattg
aactgtgccatttatgcaactattcctgtgtataaaatgggacagatgtttatgtatgat
ctctatcagtctcgccataatactgaagatttcacactctttacattggatgatgtagat
gcagcatttgataaaatacagcagctaaagttttctcagattgtcaacttgaaaggcaaa
ggacacggtctgtcaatcacgccattgcctgcaggtcacatgataggaggcacgatttgg
aagattgtcaaagatggagaggaagaaattgtttatgcagttgatttcaaccacaagagg
gagatccatctgaacggttgttcattggaaatgctgagcaggccttcattgcttattaca
gattcatttaatgctacttatgtacaacccaggaggaaacaaagggatgaacagctacta
actaatgttttggagacattacgaggtgatggaaatgtgttgatagctgtggatacagct
ggcagagttctggaacttgctcaacttcttgatcagatctggagaacgaaagatgcagga
ttaggagtttactctctggcgcttttgaataacgtcagctacaatgtagtggagttctct
aaatcacaggtggaatggatgagtgataaattgatgaggtgcttcgaagacaagagaaac
aatcctttccagttccgccatctctccttatgtcatagtctgtctgatttggctcgagtg
cctagtccaaaagttgtccttgccagccaacctgatttagaatgtgggttttcgagagat
cttttcattcagtggtgccaggattccaagaactccataattttaacttaccgtaccaca
cctggaacactggcacgattcctgattgataatccttctgaaaaagttatagatattgag
ttgagaagacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggagaaa
ctaaagaaagaagcagctaagaagttagagcagtctaaagaggcagatattgattccagt
gatgagagtgatgcggaagaagatattgatcagccaactgtgcataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaagaaatct
tatccaatgttcccagcccctgaagaaagaattaaatgggatgaatatggcgagattatc
aaaccagaagactttctagttccagaacttcaggcaacagaagaagaaaaaagcaaacta
gaatctggtttgacaaatggagaggagccaatggaccaggatttatcagatgttcctacc
aagtgtatatcagcaacagaatccatggaaattaaagccagggttacatatatcgactat
gaaggacgctcagatggggactcaattaaaaaaatcattaaccaaatgaaaccaagacaa
ctaatcattgtccacggaccacctgaagccagccaggaccttgctgaatgttgcagagct
tttggtggaaaagatattaaagtgtatatgccaaaactacatgaaactgtagatgcaacc
agtgaaactcatatttaccaggtcaggttaaaagattctcttgtcagctcacttcagttc
tgtaaagccaaggatgctgagttggcttggatagatggtgtcctggatatgcgggtctcg
aaagtggatactggagttattttggaagagggagagctaagggaagatgaagagttagag
atgcaagtggatgtgccttcttcagactctagtgtcattgcacaacaaaaggccatgaaa
agtctctttggtgacgatgataaggagatgtgtgaggagagtgaaatcatccctactttg
gaaccactgccacctcatgaggttcctggacatcagtctgtgtttatgaatgagccaaga
ctatctgacttcaagcaagttctcttgcgagaaggaattcaagctgagtttgtaggagga
gtgcttgtgtgcaacaatatggtggctgttcgcaggactgaaacggggcgcattggattg
gaaggctgtctctgtcaggacttctataggataagagaacttttatataagcaatatgct
attgtctaa
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