Lagopus muta (rock ptarmigan): 125695330
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Entry
125695330 CDS
T09141
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125695330 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmut01009
]
125695330 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125695330 (PCDH20)
Protein phosphatases and associated proteins [BR:
lmut01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125695330 (PCDH20)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Protocadherins
125695330 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
SGBP_BT4661-like
He_PIG
Motif
Other DBs
NCBI-GeneID:
125695330
NCBI-ProteinID:
XP_048805577
LinkDB
All DBs
Position
1:160004507..160008718
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AA seq
943 aa
AA seq
DB search
MGCCGEERSRAGRGAGGRLGRSQRPGMGSPGGRSSPSARGSLQHLFLFLLFVGPFNCFAS
YSRATELFYSLNEGLPPGVLIGSLARDLRLPITGGQRPAAPQPPLSFTLASRGLGGQYVH
LDNRSGELHTSALEIDREALCMESGGASVPGEADAVFLSSSSSSPDSCLLLLDVLVLPQE
YFRLVKVKIAIRDVNDNAPHFPMPHIHLSVPENAPVNTRLAIEHPALDPDVGTNGVQTYR
LRDNYGVFTLDVEENESGERTPYLIVMGALDRETREEYVTVIVAEDGGTPPLVGSATLTI
GISDINDNCPQFSDSQLNITLDGNSSLGTHVTTVHAVDLDLGSNAQITYSYSQKVPQPSR
DLFHLDESTGVITLSSKVDGNTPRHHRLIILGNGPGCIPAVITVLVTIIKVMMRPPEVVP
RFIANEVEGVVYLKELEPINTPIAFFTIKDPDEKYKVNCYLDGDGPFRLSPYKPYNNEYL
LETTKPLDYETQQLYEISVVAWNSEGFNVNKVIKIQVLDDNDNSPVFSQQLIELSIEENN
APNAFLTKLHATDADSGERGEVSYFLGPDAPSYFSLDKTTGVLTVATQLDREEKEKYRYT
VKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISVTDADA
GQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDPALSSTAKI
TILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYSIIGRR
GPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVS
NESYIESLLRKEPDINIEEKQPQVSVEPTHKKMESASCMPTLVALSIISLGSITLVTGMG
IYICLRKGKKHHRADENLEVQIPLNGRINLHMLEKKPVEISNI
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggctgctgcggggaggagaggagccgggcgggcagaggagcgggcgggcggctcggg
cgcagccagcggccgggcatgggttccccgggcggtcgcagcagccccagcgcccgcggc
agcctgcagcacttgttcctgttcctgctcttcgttggacctttcaactgctttgccagt
tacagccgtgccaccgaactcttctacagcctcaatgaggggctgcctcccggcgtgctc
attggcagcctagcccgtgacctgcggctgcccatcactggggggcagcgccctgcagct
ccccagcctcccctctccttcaccctggcttctcgtggcttgggaggacagtatgtgcat
ctggacaaccgctctggagagctacacacttctgctttggagattgaccgggaggctctg
tgcatggagagcggtggggcctctgtccctggagaggcagatgctgtatttttgtcctcc
tcctcgtcctcacctgactcatgtctgcttctgctggatgtgctggtactgccacaggag
tacttccgcctggtgaaggtcaaaattgctatccgcgatgtcaatgacaatgctccccac
ttccctatgccccacatccacctttcggtgcctgagaatgcacctgtgaacacccgcctg
gctattgagcaccctgcccttgaccctgacgtgggcaccaatggtgtccagacctaccgt
ctgcgagataactatggtgtattcaccctggatgtggaggagaatgaaagtggagagcgg
accccctacctgattgtcatgggggctctggacagggagacacgagaggaatatgtcaca
gtcattgttgctgaggatgggggcactcctccacttgtgggtagtgctacccttactatt
ggcatcagtgacatcaatgacaactgcccccagttcagtgactcacagctcaacatcact
cttgatgggaattccagcctgggaacacacgtgaccactgtccatgcagtagacctggac
cttggatccaatgcacaaatcacctattcctacagccagaaggtccctcagccatccaga
gacttgttccatctagacgaaagtacaggagtgatcacactatccagtaaggttgatggg
aacactccaaggcatcacaggctgatcatactgggcaatggtcctggttgtatccctgct
gttatcacggtgctagtgaccatcatcaaagtcatgatgaggccacctgaagttgtccct
cgtttcatagctaatgaagtggaaggagtggtatacttaaaggaactggagcccatcaac
acaccaatagcattttttaccatcaaagaccctgatgaaaaatataaagtcaattgctat
ttggatggtgatggacctttcaggctttcaccatacaagccatacaacaatgaatacttg
ttagagaccacaaaacctttagactatgagacacagcagctatatgaaatctctgtagtt
gcatggaactctgaaggatttaatgtaaacaaagtaataaaaatacaagttttggatgac
aatgacaactcaccagttttctctcaacagctgatagaattatcgattgaagaaaataat
gctcccaatgctttcttgaccaaactgcatgctacggatgctgacagtggagaaagaggg
gaagtgtcctattttttagggcccgatgctccttcctatttttctttagataaaaccaca
ggagttcttacagttgccactcaattggatagagaagaaaaagagaaatacagatatact
gtgaaagcagtagattctggattccctccaagagaatcaatagcaactgtcaccatcact
gtactggataaaaatgataatagtccaagatttatcaataaggatttcagctttttcgtg
ccagaaaactttccaggttttggtgaaattggagttataagtgtaacagatgctgatgca
ggacaaaatggatgggttgctctttcagttctgaatggaagtgatattttcgttatagat
actggaaaaggagttttgagagctaaagtctctctcgatagggagcagcaaagctcctat
gttctatggattgaagcagttgatggtggtgatcctgccttgtcgtctactgcaaaaata
acaatccttctcttagacataaatgacaacccccctttggttttgtttcctcagtctaat
atgtcttatttgttggttcttccttctacccttcctggctctcccatcactgaggtctat
gctgttgataaggacactggcatgaatgcagtcatagcatacagcatcataggaagaaga
ggcccccgaccagagtcgtttaggattgaccctaaaactggtaatataaccttggaagag
tcactcatgcaaaatgactatggtctgtatcgcctgcttgtgaaagttagtgatcatggc
tatccagaaccactccattccactgtcatggtgaatctttttgtcaatgatactgttagc
aatgagagctacattgaaagcttgttaagaaaggagcctgatatcaatatagaagagaag
cagccacaagtatctgtagaacctacacataaaaaaatggagtcagcatcctgcatgcct
actttagtagctctgtcaataataagcttgggttcgatcactttagtaactgggatgggc
atttacatctgtctaagaaaagggaaaaagcaccacagagcagatgaaaacttggaagta
caaatcccattaaatggaagaattaacctgcacatgttggagaagaaaccagtggagatt
tctaacatttga
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