Lagopus muta (rock ptarmigan): 125695416
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Entry
125695416 CDS
T09141
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03420
Nucleotide excision repair
lmut04115
p53 signaling pathway
lmut04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125695416 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
125695416 (DDB2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
125695416 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmut04121
]
125695416 (DDB2)
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125695416 (DDB2)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125695416 (DDB2)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125695416 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WD40_RFWD3
Beta-prop_TEP1_2nd
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Beta-prop_HPS5
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
125695416
NCBI-ProteinID:
XP_048805758
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All DBs
Position
6:complement(23004896..23054114)
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AA seq
595 aa
AA seq
DB search
MSSQWSPCSCIQPLMLEFVYFCDPRYFSPLATSCFRLWNLSDPSPDVETLCTPVAALLTA
IKTRRIFFCNSFLSCKPGLCGTRGKQWSDRMAPVNQPKDKKHEKTYWSEEAKSAEKRKLD
YEGLENVPLAKKLFLRKTSKAQERIGWNRGETVMKNTRAFFHQPKWQCSIVHYVYQNMLG
GSIRAQLRQCLQLPFLRSLTSYRLFRTASPFDRRVTCLEWHPTHPSTVAVGSKGGDIILW
DYEVLTKTCFIKGKGPGDSLGDIKFSPYEAVKLYVASGDGTLSLQDLEGRAVQVISRAPD
CGHENHNVCCWYCSVDVSASCRTVVTGDNLGNVVLLSTSGEEIWRLKLHKKKVTHVEFNS
RCEWLLATASVDQTVKIWDLRNIKDKANFLHVLPHDKPVNAAYFSPTDGAKLLSTDQRNE
IRVYSCSDWTKPQHLIPHPHRQFQHLTPIKATWHPRYDLIVVGRYPDPKFPGYTVNELRT
VDIFDGNTGEMVCQLYDPNASGIISLNKFNPMGDTLASGMGFNILIWSREEMVMKKQEHL
LKAMTEQGIGSRSLSRRGGQRQANPGTSKLKAKLLSWEVEEMGTKPKDSKSRGRK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcaatggagcccgtgttcctgcatccagccactcatgttggagttcgtgtac
ttctgtgatcctcgctacttctcacctttggccacatcatgcttcaggctctggaacctt
tcagatcccagccctgatgtcgagaccctgtgcacacctgtggcagcactgctgactgcc
atcaagacaaggaggatatttttctgcaacagtttcctttcctgtaaaccaggcctttgt
ggtacccgaggaaagcagtggtcagacagaatggctccagtgaaccagcccaaggacaag
aagcatgagaagacatattggtcagaagaggcaaaatcagctgagaaaaggaaactggac
tacgaaggactggagaatgtaccactagcaaagaaattgtttttgaggaaaacatccaaa
gcccaagagagaattggttggaatagaggtgagactgtgatgaaaaataccagagccttt
ttccatcagccaaaatggcagtgcagcattgttcattacgtctaccagaacatgctggga
ggctccatccgggcacagctcaggcagtgtctacagctgccctttctgcgttctctgacc
tcataccgcctgtttcgaacagcgagtccctttgacaggagagtgacttgcctggagtgg
catccaacacaccccagtactgtagctgttggttccaaaggtggagacatcattctttgg
gactatgaagtacttactaaaacctgtttcataaaagggaaagggccaggagattctctt
ggagacatcaagttcagtccttatgaggcagtgaagctttatgtggcatcaggggatggc
accctaagtctgcaggatcttgagggcagagcggtgcaggtgatctcccgtgccccggac
tgtggccatgagaaccataacgtttgttgctggtactgcagtgttgatgtttctgcaagc
tgccgtactgtggtgacaggtgataacttgggcaatgtggtcctgctcagcacttctggt
gaagagatttggaggctgaaactgcacaagaagaaagtgactcatgtggagtttaactct
cgatgtgagtggttattggccacagcatctgtggatcagacagttaaaatctgggacctc
agaaacattaaagacaaagcaaattttcttcacgtacttcctcatgacaaacctgtcaat
gcagcttacttcagcccaacagatggtgccaagctgctgagcacagaccagcgcaatgaa
atcagggtttactcatgttcagactggaccaagcctcagcatctgatcccacacccacat
cggcaattccagcacctcacacctattaaggcaacatggcatcctcgctatgatctcatt
gtagtgggtcgctatccggacccgaagttcccaggctacacagtgaatgagctgagaact
gttgatatatttgatggaaacaccggggagatggtttgtcagctctatgatccgaatgca
tctggtataatctcgctgaataaatttaaccctatgggagacacactagcctctggcatg
ggctttaatattctgatctggagccgggaggagatggtgatgaagaagcaagaacatctt
ttgaaagccatgactgagcaggggatcgggagccggagtttgtccagacgtggagggcag
agacaggcaaaccctgggacaagcaaactcaaagctaagttattgtcttgggaagtggaa
gagatgggaacaaaacccaaagattctaaatcacggggaaggaagtga
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