Lagopus muta (rock ptarmigan): 125695762
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Entry
125695762 CDS
T09141
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04140
Autophagy - animal
lmut04148
Efferocytosis
lmut05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125695762 (VPS41)
04148 Efferocytosis
125695762 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125695762 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125695762 (VPS41)
Membrane trafficking [BR:
lmut04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125695762 (VPS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_Prp19
zf_RING_Vps8_fungal
Beta-prop_EML_2
Beta-prop_HPS5
Vps39_1
zf_RING_Vps8
ANAPC4_WD40
TPR_PEP5_VPS11
WD40_WDHD1_1st
zf-RING_5
Frtz
Beta-prop_RIG_2nd
Beta-prop_IFT140_2nd
zf-RING_2
zf-RING_11
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
125695762
NCBI-ProteinID:
XP_048806620
LinkDB
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Position
7:complement(48624992..48729172)
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AA seq
854 aa
AA seq
DB search
MAEAAEKETRSNEESTDESEEDESEEEPKLKYERLSNGVTEILQKDAASCMTVHEKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSAEEFH
ETFDCPIKIVAVHPHFVRSHFKQFVTGGKKLLLYERGWMNRWKPSVLHEGEGNIRNVKWR
GHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKI
CSVKERHASEMRDLPNRYVEIVFQFDTEFYISGLAPLCDQLVILSYVKEISEKTEVECCA
RPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKTIKKHKILDIGLAYINHLVEKGEHDLAARKCQK
ILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPVLKPLIYEMVLHEFLESDYEGFATLI
KEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLRTLAELYTYDQRYGRALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIDRVVEELENRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPADASKSFNVVVFHCRHMFHKECLPVSNTVSSVQFCNICSA
KHRGPGSAILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctgcggagaaggaaacaaggtctaatgaggaatcaacagatgaatctgag
gaagatgagagtgaagaggagcccaagctgaagtatgaacgactttctaatggagtgaca
gaaattctgcagaaagatgcagccagttgcatgacagtgcatgaaaagtttttggcactg
ggaacgcattatggcaaagtttatttacttgatgtccaggggaacatcacacagaagttt
gatgttagccctgtgaagataaatcagatcagcctggatgaaagtggagaacacatgggt
gtctgttcagaagatgggaaggtgcaagtgtttggattgtattcagcggaagaatttcat
gaaacatttgactgtcctattaaaattgttgctgttcatcctcattttgtaagatcccac
ttcaagcagtttgtaacaggaggaaaaaagttactgctgtatgagagaggctggatgaat
agatggaagccttccgttttacatgaaggggaaggaaacataaggaatgtaaaatggaga
ggacacttaattgcttgggccaataacatgggcgtgaagatacttgacatgatctccaag
caaagaattaccaatgtgcctcgagatgacataagccttcgcccagacatgtatccctgt
agcctttgctggaaggataatttaacactgattattggctggggaaattcagtaaagatt
tgctcagtgaaggagcggcatgccagtgaaatgcgtgaccttccaaaccgctatgtggaa
atagttttccagtttgatacagagttctatatcagtgggcttgcacctctctgtgaccaa
cttgttatactttcatacgtaaaggagatttctgaaaagacggaggtggagtgttgcgcc
aggcccagactggacatcgtacaacctctgcctgagtcctgtgaggagatctcttctgat
gcactgacagtacgaggatttcaggagaatgaatgtagagattaccatctagagtattcg
gaaggtgaatcgctgttttatatcatcagcccaagagacgtggttgtagctaaagaacgg
gaccaagatgaccacattgactggcttcttgagaagaagaaatatgaagaggccttgatg
gcagctgagatcagtcagaaaaccataaaaaagcacaagattttggacataggcttagcc
tatataaatcacctagtggagaaaggagagcatgacttggctgctcgaaagtgccagaaa
atccttggcaaaaacacagaactctgggaatttgaagtttacaagtttaaagaaataggt
caacttaaggcaattagtcgttacttgcccagacgggatccggttttgaaacctcttatc
tatgagatggtcctgcatgagtttttggagagtgactatgaggggtttgcaaccctgata
aaagagtggcctggagacctctacaacaacacaatcatagttcaagctgtagtagatcac
ctgaagaaagatccacaaaacaggacgttgttaagaacccttgcagaactgtatacgtat
gaccagcgctatggcagagccctagaaatttacctaactctcagacacaaagacgtcttc
cagttgatccacaagcacaatctgttcagttccatcaaagataaaattgttctgctcatg
gattttgattcagagaaagcagtggacatgcttttggataacgaagataaaatttccatt
gacagagttgttgaagagctagaaaacagacctgaactacagcatgtgtatttgcacaag
cttttcaaaagagaccaccataaaggacagcggtatcatgaaaaacagatcagtctttat
gctgaatatgatcgtccaaatctactgccatttctcagagacagcacacactgcccacta
gagaaggctctagagatctgccaacagagaaactttgtagaagagacagtttatcttctg
agcagaatggggaacagccgcagtgctttgaagatgataatggaagaactgcaagatgta
gataaagctattgaatttgccaaggaacaagatgatggagaactttgggaagacctcatt
ttgtattctattgacaaaccaccttttattactggtttgttgaacaatattggaactcat
gttgaccccattcttttgattcatcgtattaaggaaggcatggagattcctaatctgaga
gactctctagtgaaaattcttcaggactacaacttgcagatcttgctgcgggaaggttgc
aagaagattcttgttgctgactctctttctttgctgaagaaaatgcatcgaactcagatg
aagggcgttctggtagatgaggaaaatatctgtgaatcatgcctgtctccaatacttcct
gcagatgcatccaagtccttcaacgtggtggtgttccactgcagacacatgtttcacaaa
gagtgtctcccagtatctaacacagtatcttctgtccagttctgcaacatatgcagtgcc
aaacacagaggaccaggaagtgcaatcctggagatgaagaaatag
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