Lagopus muta (rock ptarmigan): 125695782
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Entry
125695782 CDS
T09141
Symbol
VPS50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125695782 (VPS50)
Membrane trafficking [BR:
lmut04131
]
Protein recycling
Others
EARP complex
125695782 (VPS50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
125695782
NCBI-ProteinID:
XP_048806655
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All DBs
Position
7:22875069..22940243
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AA seq
967 aa
AA seq
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MQKIKSLMTRQGLRSPQESVHDLSPIENLRFPTKEELRESWEEPTDPQAQQEIINSIEEV
YFSNDAFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVQELE
RVTSLQNGLQLAAVICADGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAATASSV
SDGSSVVGTEENSFDRSYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSN
FSILQLHEFKFMVQSRSPSVSPSKQPASAISATVTLFEQYCNGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPMKSVSRETLRSKKKSDY
SLNKGNAPILTNTTLNVVRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DAFESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTGTLTAAEERKEKVPSPHLSHLVVL
TSGNSLYGLAERVVATESLVFLAEQFECLQPHLDAVMPAAKKPFLQQFYSQTVSTANELR
KPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDSLLKEFEEFNRRLNEVSKRV
RIPLIVSNILWEHCMRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPI
PDKEFVETYIKAYYLTENDMERWIKEHREYSTKHLTNLVNVCLGSHINKKARQKLLAAID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccggcagggtctgagaagtcctcaggagagtgtt
catgacctcagtcctattgaaaacctccgttttcctactaaggaggaactcagagaatca
tgggaagaaccaactgatcctcaagctcagcaagaaataattaatagcattgaagaagtt
tatttttccaatgatgcctttgatattgtgaagtatgaattagagaggcttcctcctgta
cttagtcttcaagaactggaagaatatagagacaaattaaaacaacagcaagctgctgta
tctaagaaagttgcagacttgattcttgaaaaacaacctgcatatgttcaggaactggaa
cgtgttacatcgttgcagaatggccttcagttagcagctgttatttgtgcagatggaaga
agacacctgaatattgcaaaggaaggcttcacacaaaccagtttgggacttcttgcaaac
caaaggaaaagacagttgcttattggactattgaagtctctgaggacaataaaaacactg
caaagaactgatgtgcgtttaagtgagatgctggaggaagaggactatccaggagctatt
caactgtgtttggaatgccagaaagctgccagcactttcaaacactacagttgtataagc
gagttgaattcaaaactgcaagatactttggaacaaatagaggaacaattggatgtagca
ctctcgaagatatgtaagaactttgatatcaatcattatacaaaggttcagcaggcttac
aggctgcttgggaaaacacagacagcaatggaccaattgcacatgcacttcactcaagct
attcacaacactgtgtttcaagtagtgcttggatatgtggagctttgtgcaggaaacaca
gacaccaagtttcagaagttacaatacaaagacctctgtacacatattacatcagacagc
tacattccatgccttgctgatctctgcaaagccctttgggaagtcatgctcagctattac
cgaacaatgcagtggcatgagaatcatgatcaagatgaggcagcaactgcgtcttctgtt
tcagatggcagcagtgtggttggaactgaggagaacagttttgaccgcagctatgtgaaa
aagaaattggaacatgggctttcacgaatatggcaggatgttcagctgaaagtgaaaacg
taccttctggggacagatctgtctaacttcaaatatgatgacttcatatttgtacttgat
gttatcagcaggctgatgcaagttggagaagagttttgtggcagtaagtctgaagttttg
caagaatctatcagaaaacaaagcgttaactatttcaaaacataccacagaacccgtctt
gaagaattaagaatgtttttggagaatgagacctgggaactttgccccgttaaatcaaac
ttcagcattttacagcttcacgaatttaaattcatggttcagtcacgttccccatctgtg
tcacctagtaagcagcctgcttcagcaatttcagcgacggtaactttatttgagcagtac
tgtaatggaggaaacccatttgaaattcaggctgacagcaaagatgatgagacagaggat
gtgttagcttccaatgggtatgaatctgatgaacaagaaaaaagtgcctatcaagagtat
gatagtgacagtgatgttcctgaggagttgaaaagagactatgtagatgagcagacagga
gatgccccgatgaagagtgtttctcgagaaactctgaggagcaaaaagaaatcggattat
agcctcaataaagggaatgcacctatcctgacaaacactacactcaatgtagtaaggctt
gttgggaagtatatgcagatgatgaacattctcaagcctattgcatttgatgtcatccac
ttcatgtcccagctcttcgactactatctgtatgcagtctatacattttttggccgaaat
gatgcgtttgaatcaacaggattgggcctcagtagtagcagattacgcaccacactgaac
agaatccaggagagcctcattgatctagaggtctccgctgatcccacaggaactctcaca
gctgctgaagagagaaaggagaaggtgccaagcccacatctcagtcatctagttgttttg
acttctggcaattcactctatggtttggcagagagagtggtagccacggaatccttagta
tttctggccgagcagtttgagtgtcttcagccccaccttgatgcagtgatgccagctgca
aagaagccttttcttcagcagttctattctcagactgtgtcaactgccaatgagctacgc
aaaccagtttattggattgttgctgctaaagctattgattatgaacagatgctgcttctc
atggctaatgtaaaatgggatgtaaaggaaatcatgtcacaacacaatatatacgtagac
tctcttttaaaggaatttgaagaatttaacagaaggttgaatgaggtatctaagagagtc
cgtattccactaatagtctcaaatatactttgggagcactgcatgcgcttggccaataga
actcttgtggaaggttatgctaatgtgaagaaatgcagcaatgaaggacgtgccttgatg
caactggactttcaacaattcttaatgaaactagaaaagctaacagacattaggcctatt
ccagataaagaatttgtggagacctacattaaagcctactacttaacagaaaatgacatg
gagcgctggataaaggaacacagggaatattccactaagcacctgacaaatctggtgaat
gtttgtctggggtctcacatcaacaagaaggcaagacagaagctgctagctgctattgat
gacatagataggcctaaaagataa
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