Lagopus muta (rock ptarmigan): 125696130
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Entry
125696130 CDS
T09141
Symbol
SMARCD3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125696130 (SMARCD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125696130 (SMARCD3)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125696130 (SMARCD3)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125696130 (SMARCD3)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125696130 (SMARCD3)
PBAF complex
125696130 (SMARCD3)
GBAF(ncBAF) complex
125696130 (SMARCD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
125696130
NCBI-ProteinID:
XP_048807368
LinkDB
All DBs
Position
7:complement(120255..371437)
Genome browser
AA seq
485 aa
AA seq
DB search
MATDEVTGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYVGSPSVRPGM
PQTVMETTRKRTAPQQVQQQQVQQQVQQQQQATQNRTRSAKRRKMADKILPQRIRELVPE
SQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKSDADDSDGS
IASWELRVEGKLLDDLSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGF
QVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQTRSAIIQALWQYIKTNKLQD
SHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPDPIVINHIISVDPNDQKKTACY
DIDVEVEDPLKGQMSSFLLSTANQQEITALDNKIHETIESINQLKIQRDFMLSFSKDPKG
YIQDLLRSQSRDLKVMTDVVGNPEEERRAEFYHEPWSQEAVSRYFYCKIQQRRQELEQSL
GVRNT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggctacagacgaagttacaggaggggctcgcaaagctacgaaaagcaaactttttgag
tttctggtccatggggtgcgacctgggatgccatcaggagctcgaatgccccatcagggg
gctcccatgggtcccccaggccctccatatgttggaagcccctcggtgagacctgggatg
ccccagactgtgatggaaacaacgagaaaacgtactgcaccacagcaggtccaacagcag
caggtgcagcagcaagtgcagcagcagcagcaagctactcagaaccgaaccaggagtgcc
aagaggaggaagatggctgacaaaattctccctcagaggatccgggagctggttcctgag
tcccaggcctacatggatctgttggcttttgaacgcaaactggaccagaccattatgcgg
aagcgcgtggatattcaggaagcactgaagaggccgatgaagcaaaagcggaagctgaga
ctttatatctccaacacatttaatcctgcaaagtctgacgctgatgactccgacggcagc
atcgcatcgtgggagcttcgagtggaggggaagctcctggatgatctcagcaaacagaaa
cggaagttttcatctttttttaagagtttagtcattgaactggacaaagatctctatgga
cctgacaaccatcttgtggagtggcacagaactcccacaactcaggagactgatggcttc
caggtgaaaagacctggtgatgtcagtgtgcggtgcacgctactcctcatgttggattac
cagcctccgcagttcaaactggacccacgactggcccgtttgctggggatacacacgcag
acccgatcagctatcatccaggctctgtggcagtacatcaaaacaaataagctgcaagat
tcccatgataaggaatacattaactgtgacaagtacttccagcagatttttgactgtcca
cggctaaagttttcggaaatccctcagagactgactaacttgctgctgccaccagatcct
atcgtgataaaccatatcatcagtgttgaccccaatgatcagaagaagacggcttgttat
gacatagatgtagaagttgaagacccattaaagggacagatgagtagttttcttctctca
acagctaaccaacaggagattacagcattggacaacaagattcatgagacaatcgaatcc
ataaatcagctaaaaatacaacgtgacttcatgctgagcttctccaaagatcccaaagga
tacatccaagaccttctccggtcccaaagtagggatcttaaggtgatgactgatgtagtt
ggaaatccagaagaagaacgcagagctgaattttatcatgagccatggtctcaagaggct
gtgagcagatatttctactgcaagattcagcagcgccgacaggaactggaacagtctctg
ggagtgcgcaacacataa
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