Lagopus muta (rock ptarmigan): 125696156
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Entry
125696156 CDS
T09141
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125696156 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125696156 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lmut04812
]
125696156 (VIM)
04147 Exosome [BR:
lmut04147
]
125696156 (VIM)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
125696156 (VIM)
Cytoskeleton proteins [BR:
lmut04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
125696156 (VIM)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125696156 (VIM)
Exosomal proteins of other cancer cells
125696156 (VIM)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
TPR_MLP1_2
DUF7491
RBD-FIP
DUF4515
Sec10_N
Motif
Other DBs
NCBI-GeneID:
125696156
NCBI-ProteinID:
XP_048807410
LinkDB
All DBs
Position
7:complement(19767930..19775151)
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AA seq
460 aa
AA seq
DB search
MSFTSSKNSSYRRMFGGGSRPSSGTRYITSTTRYSLGSALRPSSARYVSASPGGVYATKA
TSVRLRSSMPPMRMHDAVDFTLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQ
QNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLR
EKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQ
AQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNN
DALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQ
DEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRET
NIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcaccagcagcaagaactcctcgtaccgccgcatgttcggcgggggcagccgg
cccagcagcggcacccgctacatcacgtccaccacccgctattcgctgggcagcgccctg
cggcccagcagcgcccgctatgtgtccgcctcgcccggcggcgtgtacgccaccaaggcg
acgtcggtgcggctgcggagcagcatgccgcccatgcggatgcacgacgccgtggacttc
accctggcggacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtagag
ctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcag
cagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctg
ggcgacctgtacgaggaggagatgcgggagctgcggcggcaggtggaccagctgaccaac
gacaaggcccgcgtcgaggtggagcgcgacaacctggccgacgacatcatgcgcctgcgg
gagaagttgcaggaggagatgctgcagcgggaggaggccgagagcaccctgcagtccttc
cgacaggatgttgacaatgcctctctggcacgccttgatcttgagcgcaaagttgagtcc
ctgcaagaagaaattgtcttcttgaagaagcttcatgatgaggaaatccgggaactgcag
gctcaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttact
gctgccctgcgtgatgtccgtcaacaatatgaaagcgttgctgctaagaatcttcaggaa
gctgaagagtggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaat
gatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcagtctctc
acctgtgaagttgatgcccttaaaggaagcaatgaatccctggaacgccagatgcgtgaa
atggaggagaatttcgctgttgaagctgctaactaccaagacactattggccgcctgcag
gatgagattcagaacatgaaggaagaaatggctcgtcatcttcgtgagtaccaggacctg
ctgaatgtaaagatggctcttgatattgagattgctacctacagaaaactgctggaggga
gaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaacc
aacattgagtctcagccaatggttgacactcactcgaagaggacacttctaattaagacc
gtggaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggag
taa
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