Lagopus muta (rock ptarmigan): 125696951
Help
Entry
125696951 CDS
T09141
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125696951 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125696951 (PRPF40A)
Spliceosome [BR:
lmut03041
]
Complex A
U1 snRNP components
U1 related factors
125696951 (PRPF40A)
Complex B
125696951 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
125696951
NCBI-ProteinID:
XP_048809304
LinkDB
All DBs
Position
8:1170999..1191335
Genome browser
AA seq
1025 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKGTRLAGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCGGGSLLSPSMRPGAVDRSSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVCAAQQTSTTNSSGSEEHSKQKS
TWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQT
KESRWAKPKELEDLEALIKAEENSTKTEESASAASAAADAANAATTATAAAEAATAGAAG
AAAASETESTAASAVVENESVAAATAEDQGQQATSAPAAQEQGAEGAANAADDSKQDGSA
DASKKEGDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL
AKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFG
EMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWS
EAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNR
ESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVSSSGSTALDLFKFYVED
LKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEK
AEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLES
ERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSETEDDDSHSKKKRQR
SESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKKERERESEKDR
ARQRSESKHKSPTKKRPGKDSIDLKGDEDSWLNAEGNWDTSGSELSEGELEKQRRTLLEQ
LDEDQ
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggggactcggcggcggcggcggccacggcctccccgcagccgctgccgttc
tccctgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgtcccgtc
gcttcggccgccgaccaatcgccgaagggcacccggctggcggggcgccccgattggccg
gccggcaagccggtcagcctgctggccccgctgctcccgccccgcggggagcccgagccg
ctgatgcccttcggcccctcgtcgcggcagccactcagagggcgccttcttggcaggtgc
ggcgggggcagcttgctcagcccctccatgcggcccggcgctgtggaccgcagctctctt
atgatgggacacccagggatgccgcattacccgcccatgggaatgcaccccatggggcag
aggccaccaaacatgcctccagttccacatggcatgatgcctcagatgatgcccccgatg
ggaggaccaccaatggggcagatgcctggaatgatgcagtcagtcatgcctggaatgatg
atgtctcacatgtcccaagctgctatgcagcctacggttccgccaggggtgaacagcatg
gatgcacaagtaggtgtgacacctcctggaactcagacaacacatcccgtggtttgtgca
gctcagcaaacatccacgaccaacagttcaggcagcgaggagcactctaaacagaaatcg
acgtggacggagcacaaatcgcccgacggcagaacctattactacaacactgaaacaaag
cagtccacgtgggagaagccagatgatcttaaaacacctgctgagcaattgctgtctaag
tgcccctggaaagagtacaaatctgattctggaaagccatactactacaactcccaaact
aaggaatcacgctgggcaaaacccaaagaactcgaagatctggaagcactgatcaaagct
gaagaaaacagcaccaagactgaagaatctgcttcagcagcttctgctgcagccgatgca
gccaacgcagccaccacagccacggctgctgctgaggctgccacagctggtgctgctggt
gctgctgcagcctccgaaacagaaagcactgctgcctctgctgtggtagaaaacgagagt
gttgctgcagccacagctgaggatcaggggcagcaagcaacttcagctcctgcagctcag
gaacagggtgcagaaggtgctgctaacgcagctgatgactccaagcaggacggttcagca
gatgcttcaaagaaggagggcgatgatgcgcagccagttaaaaaaacctacacctggaat
acaaaagaagaagcaaaacaggcatttaaagaactcctaaaagaaaagcgagtaccatcc
aatgcttcttgggagcaagccatgaagatgatcattaatgatcctagatacagtgctttg
gcaaagctgagtgaaaaaaagcaagcctttaatgcttacaaagttcaaacagaaaaagaa
gaaaaagaagaagcaagatcaaaatacaaagaagctaaagagtccttccagcgttttctg
gaaaaccatgagaagatgacatccacaacacgatacaaaaaagctgaacaaatgtttggg
gagatggaggtctggaatgcaatatctgagcgtgaccgcctggagatttatgaagatgtt
ttgttttttctgtctaagaaagaaaaggaacaagccaagcagttacggaagaggaactgg
gaagctctgaagaacatccttgataacatggccaacgtcacttactgcacgacttggtca
gaggctcagcagtacctgatggacaaccctacgtttgcagaagatgaggaacttcagaat
atggataaggaggatgcactgatctgctttgaggaacacatcagggcattggaaaaagaa
gaggaagaagaaaaacagaaaagtttactgagagaaagaaggcggcagcggaaaaacaga
gaatcttttcagatatttctagatgagctgcacgagcacggacagttacattcaatgtcc
tcttggatggagctgtacccaaccataagctctgacatcagattcactaacatgcttggt
cagcctgtttcttcatcaggatcaacagcgctcgatctcttcaagttctatgttgaagac
ttaaaagcacgttaccacgatgaaaagaagatcataaaagatatcttaaaggataaagga
tttgtagtggaagtgaacacttctttcgaagactttgttacagtcatcagttcaactaag
agagccaccactttagatgcaggaaatatcaagctggctttcaatagtctgctggaaaag
gcagaagcccgtgaaagagaaagggaaaaagaagaagctcgcaaaatgaagcggaaagag
tctgccttcaagagcatgctgaaacaggctactcctcccatcgagctggatgctgtctgg
gaagatatcagagacaggtttgtgaaggaaccagcatttgaagatatcactctagagtct
gaaaggaaaagaatatttaaagatttcatgcatgtactcgagcacgagtgccagcatcat
cattcaaagaacaagaaacattctaagaaatccaaaaagcaccacaggaagaggtctcgc
tctcgctcgggctcggagacagaggatgatgatagccattcaaagaagaaaaggcagcgt
tcagaatctagatctgcttctgagcgttcttccagtgcagaatctgagagaagttacaag
aaatcaaaaaaacacaagaaaaagagcaagaaaagaagacacaagtctgattcaccagaa
tctgatattgaacgagaaaaagacaaaaaagaaagagagagagaaagtgaaaaggataga
gctagacaaagatctgaatcaaaacataaatctccgactaaaaaacgacctggaaaagat
tctattgatctcaaaggagatgaggacagctggttaaacgctgagggcaactgggacacc
tcgggcagcgagctgagcgaaggggagttggaaaagcagaggcggactcttttggaacaa
ctggatgaagatcaatga
DBGET
integrated database retrieval system
