Lagopus muta (rock ptarmigan): 125697040
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Entry
125697040 CDS
T09141
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125697040 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125697040 (BARD1)
04121 Ubiquitin system [BR:
lmut04121
]
125697040 (BARD1)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125697040 (BARD1)
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125697040 (BARD1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125697040 (BARD1)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125697040 (BARD1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125697040 (BARD1)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125697040 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_4
zf-RING_UBOX
NIBRIN_BRCT_II
ANK_LRRK2
zf-RING_10
Prok-RING_4
RTT107_BRCT_5
PTCB-BRCT
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
125697040
NCBI-ProteinID:
XP_048809560
LinkDB
All DBs
Position
8:complement(33481687..33527583)
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AA seq
800 aa
AA seq
DB search
MCANGRAALGACAVVAGGEFGVATAMREALRGRSGNRPAQGGQPGPVTSMAGPWAHTRAA
LDGLERALSCSLCAGVLREPVSLGGCEHVFCLSCIGDHVGKGCPVCHVPAWVQDMQINRQ
LDDMVQLCSKLRRLLGAGTSDSTESTSTPMCSDLGENTKKGQIKMWLSPRSRKIRCVVNK
NQPKPKSNDPCQDPSSVYHFFPSPVHEKPSKPTKKQTQRQSKKMKKKRLADVNKLWGLEK
PEQKGGVEEKTSKEKCVTICSEPLILCTPEADSSKETLQQESVKEADSTRNLEGVEVSPE
VKSSKEGDNDEAVCPVQVSKEKNCAAEKLPSIESEAMPLKRGREQSKLPDTSQSKRRRSE
RSLNRDSGSQTSCSEDLSQDCLIPQVTEPKTPVQVCGSVMKTRSSAARSAPSLPESPSTP
SALKACNQVGPPQSPSVFKSPASNTIARRNYKGETLLHIASIKGDLAAVEELLKNGADPN
VKDNAGWTPLHEACNHGHQEVVELLLQHKALVNSTGYQNDSPLHDAAKNGHVSIVELLLL
HGASRDAVNIFGLRPVDYAESEKMKSVLMLPVKNESFSFSQPSESPSQPRDGPLGILGSS
LSSKQQKLLNQLAAVLKARRCTEFNSTVTHVVIPDTPMPRTVKCMMAVLTGIWVLKFEWV
QACLQSTVREQEEKYEIQGGPRRGRLNREQLLPKLFDGCYFYFLGSFKSHQKSDLVELIK
AGGGQILVRQPKPDSDVTQTINTVAYHAESASDQRFCTQYVIYDASSKFKPERIGQGKVW
FAPSSWIVDCIMSFQLLPVK
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgaacgggcgcgcagcgcttggcgcctgcgcagtggtggcgggcggggaattt
ggagtggcgacggcgatgcgtgaggcgctgcgcggccgctcgggcaacaggccggcccag
ggcggccagcccggccccgtcacctccatggcggggccgtgggcgcacacccgagcagcg
ctggacgggctggagagggcgctgagctgctccctctgtgccggtgtgttgcgggagccc
gtgtctctggggggctgcgagcacgtcttctgtctatcttgcataggtgaccatgttggc
aaagggtgcccggtgtgccacgtgccagcctgggtgcaagacatgcagataaaccgtcaa
ctggatgacatggtccagctctgcagcaaactgcggcgtctcctgggtgcaggcacctca
gattcaacggaatctacgtctacaccaatgtgctcggacttaggagaaaacactaagaag
ggacaaataaaaatgtggttgagcccaagaagtaggaagattcgatgtgtcgtgaacaag
aatcagcctaagcctaagagtaatgacccttgtcaagacccgtcttcagtttatcatttc
tttccttcccctgttcacgagaagccctccaaaccaacaaaaaagcaaacccagaggcag
agtaagaagatgaagaaaaaacgcctagcagacgtgaacaaactgtgggggttagagaag
cctgagcaaaaaggaggggttgaggagaagacttccaaggaaaagtgtgtgaccatttgc
agtgagcctctaatcctgtgcactccggaagcagatagctccaaagagacacttcaacag
gaatctgtaaaggaagctgactctaccagaaacttggaaggagtggaagtatctccagag
gtgaaatcctcaaaggagggagataatgatgaggctgtctgtcctgtacaagtcagcaag
gaaaaaaactgtgctgcagagaaattgccatcaatagaaagcgaagcaatgcctttgaaa
cgtggaagggagcaatcaaaacttccagatacttctcagtctaaaagacgaagaagtgag
aggagccttaacagggactcaggcagtcagacttcttgctcagaggacttgtctcaggat
tgccttatcccccaagtgaccgaacccaagacacctgtgcaggtctgtggcagtgtaatg
aagacaagaagctctgcagcaagaagtgctccttcacttccagaatctccctccactcca
tctgctttgaaggcttgtaatcaagtaggaccaccacagagtccttctgtgttcaagtcc
cctgctagtaacacgattgccagaagaaattacaaaggggagactttgcttcatattgct
tccatcaagggtgacttagcagctgttgaagagctgctgaaaaatggggcagatcccaat
gttaaggacaatgctggctggacaccactgcacgaggcatgtaaccacgggcaccaagag
gtggtggagctgttgttacaacacaaagcactggtgaattctacgggctatcagaacgat
tcgccccttcacgacgctgccaagaatgggcacgtgagcattgttgagctgctgcttctg
catggtgcctcccgtgatgcagttaatatatttggtctgcggcctgtggactatgcagag
agtgaaaagatgaagtctgtgctaatgttaccagtcaagaatgaatcattttcatttagc
cagccctctgagagcccaagccagcctagagatggacctcttggtatcctggggagcagt
ctgagttcaaaacaacagaaattgctgaaccagctagcagcagttctgaaggctcgaaga
tgcactgaatttaacagcacagtaacccacgttgttattcctgatactccaatgccaagg
accgttaaatgtatgatggctgttctgactggaatttgggtcctgaagtttgagtgggta
caagcctgtctacaaagcacagttcgagaacaagaagagaagtatgaaatccaaggtggc
ccacgaagaggccggctcaacagagaacagctgctgcccaagctgtttgatggatgctac
ttctatttcttgggatcattcaaaagtcaccagaagagcgatcttgtggagctgatcaaa
gcaggaggaggacaaatcctggttaggcagcccaaaccagacagcgatgtgacacagacg
atcaacacggtggcataccatgcagaatctgcttctgaccagagattttgcactcagtat
gtcatctatgatgcatcttctaaattcaaaccggagagaattggtcaaggcaaagtctgg
tttgctccctccagctggattgtagactgcataatgtcatttcagctgctgcctgtaaag
tga
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