Lagopus muta (rock ptarmigan): 125697490
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Entry
125697490 CDS
T09141
Symbol
VPS8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125697490 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125697490 (VPS8)
Membrane trafficking [BR:
lmut04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125697490 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_11
Clathrin
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WDR55
RING_Ste5
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
125697490
NCBI-ProteinID:
XP_048810726
LinkDB
All DBs
Position
9:complement(20373970..20437894)
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AA seq
1489 aa
AA seq
DB search
MISFPPTAGSRPRRSLIQFRCRRAGAAAYFPINRSVPSPPPLGYRRGAAPLTAAGGGRRC
CAAPARSGGGSGRGFESRRRRPASPATSPSPAMDAAPEEGPAGTEAEPDGLPCPEPSASR
LSAVELDRELDSRSELIDDKEFDIPQVDTPPTLESILNETDDEEESFILEDPFLLNIDNT
DTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRLSLLKGISAQIVSAADKVDAG
LPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGAQYGAISALSINNDCSRLLCG
FAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVM
GVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHPITQYSLLAMASLTKILVIGLKPSLKV
WMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDTGAIHVTKQKQ
LHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELETIEIPEVQLVYNSSHFKSLAT
GGNVSEALALVGEKACYQSISSCGGQIFYLGTKSVHVMTLRSWRERIDHLLKQERLTDAL
ALAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVEILLHYADRTLKKCPDQGKIQVMEQHF
QDVVPVIVDYCLLLQRTDLLFNQIYDKMSENSVAKGIFLECLEPYILSDKLMGITAQVMK
DLLLHFQDKNRLENMEACIVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMNDFISPM
EKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQIFE
FLIRLHSAEGSVDEEVYPHIRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILL
KVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQ
VLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERELRYDKIIDCYLRDPVRKEEVF
NYIHNILSMPGYSAEEKQAVWQKALEHVEELLLLSPCKAADLVAIHFTEQIESIIANLQD
QFLLFQFLRSLLDPREGINQDLLHLPPHITEQFIELLCQHSPDHVLETLKVLEYCRLEET
IQITQKYQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLMLTQDDGGSAEIPLLESIEDT
LMKTIALCQRNSHNLNQQQREALWFPLLEAMMSPQKLSGSSQYRYAESLKSLTMQVLNNM
AAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSL
CNLRASVTRGLTPKQDYCCICLQQYKRRQESADEIIVFSCGHLYHSLCLLSKECGAVSKD
VMRWMCYKCNSSSKGGKLSENFSELKKGSGTSLAQTGSESALDPQQIQAFDQLCRLNRGT
SRLALLTELSRGGEKHGLLSVSHGDSAASSVFHNETFQLHLAPPPLIDD
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttccctcccaccgcaggctcacgtcctcgacgctccctaatccagtttcgc
tgccgccgtgctggggcagccgcgtacttcccaataaaccgctcggttccatcgcctccg
cccctcggttaccgccgcggtgcggcccctttaacagcggcggggggagggcggcggtgc
tgtgctgcgcctgcgcggagtgggggcggctccggacgcgggttcgagtcccggcgccgc
cggcctgctagccccgccaccagtcccagcccggccatggacgcggcgccggaggagggc
cccgcgggaaccgaggctgagccggacgggctgccctgcccggagccgtccgcgtcccgc
ctgagcgcggtggagctcgaccgcgagctggactcccgcagcgagctgatcgatgacaaa
gagttcgacatccctcaagtcgataccccgccaacgctggagagcatcctgaacgagact
gatgatgaagaagagtctttcattttggaagatccctttctcttgaacattgataacaca
gatacacactcctatgacacgtcttctgtagcaagctctgacagcggggacaggacgcac
ctgaaaaggaagaaaaaactcccagattctctctctctgcatggatcagttataagactc
tcccttctgaaagggatttctgcccaaattgtatctgcagcagacaaagtggatgctggt
ttgcctactgcaattgcagcatcaaatctgatagcagtggggacttctcatgggctagcc
ctgatttttgatcaaaaccaggctctgcggctgtgtctgggcagcactgctgttggggct
cagtatggggctatctctgctctcagcatcaacaacgactgctccagactcctgtgtggc
tttgcaaaaggacagatcacaatgtgggatctggccagtgggaagctgctacgatcaata
acagatgctcaccccccaggaacagccattttgcacattaagtttacagatgacccgaca
cttgcaatttgcaacgacagtggaggctccgtgtttgaactctcatttaagagggttatg
ggagtgagaacgtgtgaatctcgatgtctcttcagcggctccaagggggaggtttgttgt
attgaaccattgcatgcaaaggttgaactgagagaccatcctatcacccagtattcactg
ctggccatggcctccctgacaaagatactggttattggcctgaagccatctttgaaagtg
tggatgacttttccctacggtcgtatggacccttcgagtgtccccctcctggcctggcac
tttgtggctgtacagaactcagtgaaccccatgcttgcgttttgtagaggcgatgtcgtt
cattttcttctggtaaagagggatgatactggtgcaatacatgtcactaagcagaagcag
ctccatcttcactatgacctcatcaacttcacttggataaactcacgaacagcagtgctt
ctggacagtgtggagaagctgcatgtcatcgatcgtcagacacaggaggagttggagacc
atagagattccagaagttcagctggtctacaacagcagccacttcaagtccctggctaca
ggaggcaatgtcagcgaggcgctggcattggttggagagaaagcttgttatcagtccatc
agcagctgtggtggccagatcttctacctgggaactaagtcagttcacgtcatgacattg
aggagctggagagagagaattgatcaccttctgaaacaagagcgtctcactgatgccctg
gctcttgcttggtccttttatgaagggaaagcaaaggctgtagtaggcttgtctggggac
acaagcaagcggaaagcagtcattgcagacagaatggttgagatccttctccattatgct
gatcggactttgaagaaatgccctgaccaaggaaaaatccaggttatggagcagcacttt
caggatgtggtgcctgtcatagttgattactgccttttgctccagcgcacagatctatta
tttaaccagatctacgataagatgagtgagaattctgtagccaaaggaatctttctggag
tgcttggagccatatatcttaagtgataagctgatgggaatcacagctcaagtgatgaaa
gacttgctccttcacttccaagacaagaacaggttggaaaatatggaagcctgcattgtg
catatggatatcaccagcctggacatacaacaggtggtccttctgtgctgggaaaaccat
ctctatgatgccatgatctatgtctacaacagtggaatgaatgacttcatcagtcccatg
gagaagctgttcaaagtcattgctcctccactgaatgctgggaagtctctcacagatgag
caggtggtaatgggcaacaagctgctcgtgtatataagctgctgcttggcaggccgtgcg
tatccattgggtgatattcctgaagatctggtacctctggttaaaaatcagatctttgag
tttctcatccggttgcactcagcagagggatctgtggatgaggaggtctaccctcacatt
cgtaccttgctgcactttgacactcgggaattccttaatgttcttgctttgacttttgaa
gactttaagaatgacaagcaagctgtggaatatcaacagcgcattgtggacatacttctg
aaagtcatggtagagaattctgacttcaccccatcgcaagttggctgtctctttactttc
cttgcccgtcagctggccaagcccaacaacacactgtttgtgaacagaacactttttgat
caggtccttgaatttctttgcagtccggatgatgactcccggcattcagagaggcagcag
gtgctgttagaactgctgcaggcaggagggatagtgcagtttgaagagagccgtctcatc
caaatggcagaaaaagctgaattctatcagatttgtgagttcatgtatgaacgagagctt
cgctacgacaaaatcattgactgctacctgcgtgatccagtgagaaaggaagaagttttc
aactatattcacaacatcctgtccatgcctggctacagtgctgaagaaaagcaggcagtg
tggcagaaagctttggaacatgtagaggagttattgctactcagcccatgtaaagcagct
gacttggtggccatccacttcactgagcagattgagagcatcattgcaaaccttcaggac
cagttcttactcttccaatttctaaggagtctgcttgatccgagagaaggcatcaaccaa
gatctcctgcacctaccaccccacatcacggagcagttcatcgagctgctgtgtcagcac
agccctgaccacgttctggagacactgaaagtcctggagtactgcaggctggaggaaacc
atccagataacccagaaatatcagctccatgaagcttcctcatatttactggagaagaag
ggagatatccatggtgcctttctggttatgctcgagcgattgcagagcaagttgctgatg
cttacacaggatgatggaggttcagcagaaatccccttgctcgaaagcattgaagatacc
ctaatgaaaactattgccctttgccagaggaattcacacaacctaaaccagcaacagcga
gaggccctctggtttcccctgctggaggctatgatgtccccacagaaattgtctggctct
tcacagtaccgatatgctgaatccttgaagagtttgacgatgcaagtgctgaacaacatg
gctgcgtttattgctcttccttcaatcctgcagagaattctacaggatccagtttatgga
aaagggaaacttggagaaattcaaggtctcgtcttgggaatgctggacacatttaactat
gaacaaactcttttagagacgaccacaaaccttctaaaccacgatctccactggtccctg
tgtaacctaagagcttctgtcactagagggcttaccccaaagcaggattactgctgcatt
tgtctacagcagtacaaaaggaggcaagaaagcgctgatgaaatcattgttttcagctgt
ggccacttataccattccctgtgcctgctcagtaaggagtgtggggcagtaagcaaagat
gtgatgcggtggatgtgctataaatgcaactcaagcagcaagggtggaaaactgagcgag
aacttctcagagctgaagaaaggaagtggaacctccttggcacagacagggtcagagtct
gcattggatcctcagcaaatccaggcctttgaccaactctgccgactcaaccgtgggacc
tcgcggttagctctcctgactgaactgtcccgcggtggggagaagcatgggctgctcagt
gtttcccacggggactctgctgccagcagcgtcttccacaatgagaccttccagctgcac
ctggcccctccaccgctgatagatgattaa
DBGET
integrated database retrieval system
