Lagopus muta (rock ptarmigan): 125697622
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Entry
125697622 CDS
T09141
Symbol
SNED1
Name
(RefSeq) LOW QUALITY PROTEIN: sushi, nidogen and EGF-like domain-containing protein 1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lmut04990
]
125697622 (SNED1)
Domain-containing proteins not elsewhere classified [BR:
lmut04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
125697622 (SNED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
NIDO
EGF_TEN
fn3
EGF_2
EGF_CA
EGF_3
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_4th
cEGF
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
125697622
NCBI-ProteinID:
XP_048811023
LinkDB
All DBs
Position
9:complement(19007153..19026891)
Genome browser
AA seq
1508 aa
AA seq
DB search
MQMRPQRGAASESLRGXSRAARPAAELRAAGTAPFRSAPPRAPPCRGCRCRREGDAGRSA
TGAAMRGLAGWLALATLLGEWLRAGGVVPLADFYPFGPAQGDAATLKQDDGGSELRPLSV
RFPFFGAGHTGLYVNNNGIISFLKEVSQFTPVAFPISKDRRVVAAFWADVDNRRAGDVYY
RESQDRAILERATKDIAQYFPEFPDFSAQWVFIATWYRVTFFGGSSFSPVNTFQIVLITD
GKLSFTIFNYESITWTTGMHASSGGDFAGLGGIAAQAGFNAGDGKRYFNIPGSRTDDIAD
VEMTTNVGIPGRWVFRIDDAQVQVGGCSNTTSVCLTLRPCLNGGKCIEDCITGNPSYTCS
CLAGFTGKRCHVDVDECLSHPCQNGATCINSVNSFSCQCPPGFRGASCEIEESPCETKVC
QNGGTCQVANGTAVCTCQPGYAGGDCETEVNECESSPCLNGGHCVDLVDNYTCVCLEPFV
GQRCETDPSSCEDRSCRNRQTCNYIRPGRYICTCSPGYYGNNCQYGGPRVPSACLSNPCQ
NGGSCLELEQGYACDCPEGYAGQDCHDKLTEGCECRNGGSCLEGNVTICQCLPGYFGLLC
EFEVTTTPCNVNTQCPDGGYCMEYGGSYLCVCHTDYGTNHTVPSPCDSEPCLNGGSCETQ
DDSYTCECPSGFLGKHCERARPRLCSTAPCRNGGTCKEADGEYHCACPYRFTGRHCEIGK
PDPCASGPCQNGGTCFHYIGKYKCDCAPGYAGRHCEIVPSPCFLSPCENGATCEDLGGDF
VCTCPMGYTGKRCGTEIDCGMPSAVKHAQASFNSTTVGSLAKYHCELGYVLSQHNSPRVC
RSQGVWSDPPECDEIDECWSQPCLNGGQCKDRIAEFLCVCEPGYTGLHCELEVDECQSEP
CKNGGTCRDLLGSFACSCPEGFVGTLCEEEVDACESDPCQNGGECEGDGGSYLCVCPEGF
FGYHCETASDPCFSSPCGSRGYCLPSNGTHSCTCKVSYTGKSCEKELLPPTSLKVERVED
TGVLISWHPPEDAAARQLIDGYAVTYVSFDGSYRRTDFVDRSRSAHQLRALASGRAYNIS
VFSVKRNVNNKNDISRPVMLTTRTRPRPVEGFEITNVTASTITVQWALHRLKHSTVSRVR
VSIRQPGDLEDRTVELNSSVAKYTFLDLQPGERYIVHVTTLSGMGTEDHPSESLATAPFH
VWTRPLPPRNLTASRVTPTSVSMTWEQPPTGAVEGYIINVTTAQSVKSRYVPNGKLVSYT
VRDLLPAQRYRLSVTAVQNTEQGQVHSEPIHLYVTTLQKDGAPERRWSQAGHPRVLRNRL
PPAFLPELRLLADHDTAEEPSPAPRFTELVDGRRRISARFGTLPSKSITVKTQPEAPVRL
ENTEEPSRSSLALQMREAWSKSIRQNCSTNPCKNGGTCVSESESYHCDCSPGFKGRHCEL
ACKKVPHSCTRLYSETKSFPVWEGGICHYLYKRIYKVHQDVCYKESCESTGSKKTSRKRS
NSHTLKKP
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgcgcccccagcggggcgctgcgagcgagtcgctccgcgggtagagcagagcg
gcgcggccggcggcggagctccgagctgcgggcacggctccgttccgttccgctccgccc
cgcgcgccgccatgtcgcggctgccggtgccggcgtgagggagacgcgggccggagtgcg
acgggcgctgccatgcggggcctggcgggctggctggcgctggcgacgctgctgggcgag
tggctgcgggcgggcggcgtggtgccgctggcggacttctacccgttcgggccggcgcag
ggcgacgccgccacgctgaagcaggacgacggcggctccgagctgcggcccctctccgtg
cgcttccccttcttcggagcggggcacaccgggctctacgtgaacaacaacgggatcatc
tccttcctgaaggaggtctcccagttcacgccggtggccttcccgatctccaaggaccga
cgtgtggtggcggctttctgggcggacgtggacaaccggcgggcaggtgatgtgtattac
cgggagagccaggaccgggccatcctggagcgggcgaccaaagacatcgcgcagtacttc
cccgagttccccgacttctctgcccagtgggtgttcatcgctacgtggtaccgagtcact
ttcttcgggggaagctcgttttctccggtaaacactttccaaatagtcctcatcacggac
ggcaagctctccttcaccatcttcaactatgagtccatcacctggaccacgggtatgcac
gccagcagtgggggggactttgctgggcttggcggcatcgcagcgcaggcaggttttaac
gccggtgatggaaagcgctacttcaacatccccggatcccgcactgacgacatcgctgac
gtggagatgacgacaaatgtgggtatccccgggcgctgggtgttcagaatcgatgatgcc
caggtgcaagtggggggctgcagcaatacaacctccgtgtgcctgacactgcggccctgc
ctgaatggggggaagtgcatcgaggactgcattactgggaacccctcctacacctgctcc
tgcctcgcgggcttcacggggaaaaggtgccatgtcgacgtggatgagtgtctgtctcac
ccgtgccagaacggagccacctgcatcaacagtgtcaacagcttcagctgccagtgcccg
ccaggcttcagaggtgccagctgtgagatcgaagagtcgccgtgtgagaccaaggtgtgc
cagaacggcgggacgtgccaggtggcaaatgggacagcggtgtgcacctgccagccaggg
tacgcaggaggagattgcgagacagaggtgaacgagtgcgagtccagcccctgcctgaat
ggagggcactgtgttgacctggttgataactacacgtgtgtgtgcctggagcccttcgtg
ggacagcgctgtgagacagacccctcctcctgcgaggaccggagctgcaggaaccggcag
acatgcaactacatccgcccgggacgctacatctgcacgtgctccccgggctattatggc
aacaactgccaatacggtggcccccgtgtgcccagtgcctgcctctccaacccctgccag
aatgggggcagctgcctggagttggagcagggctatgcctgtgactgcccggagggctat
gccgggcaggactgccatgacaagctgactgagggctgtgagtgtcgtaatgggggcagc
tgcctggaggggaatgtcaccatctgccagtgcctgccgggatattttggcctcctctgt
gaattcgaagtgaccaccactccgtgcaatgtgaacactcaatgtccagacggtggctac
tgcatggagtacggcgggagctacctgtgtgtgtgccacaccgactacggcaccaaccac
acggtgccgtccccctgtgactctgagccctgcctgaatgggggctcctgcgagactcag
gatgactcctacacctgcgagtgtccctcaggcttcctgggcaagcactgtgagagagcc
cggccgcggctctgcagcacggcgccgtgccgcaatgggggcacatgcaaggaggccgac
ggcgagtaccactgtgcctgcccctaccgcttcaccggccgccactgcgagataggtaaa
ccggacccctgtgcctcggggccctgccagaatgggggcacctgcttccactacatcggc
aagtacaagtgtgactgcgccccgggctatgctggacggcactgcgagatcgtgccatct
ccctgcttcctgagcccgtgtgagaatggtgcaacctgcgaggacctcggcggggacttt
gtgtgcacgtgccccatgggctacacggggaagcgctgcgggacagagattgactgcggc
atgcccagcgctgtgaagcacgcccaggcctccttcaactccaccacggtgggctcgctg
gccaaataccactgtgagctgggctacgtcctcagccagcacaacagcccccgcgtctgc
cgctcgcagggcgtctggagcgacccccctgaatgtgacgagattgatgaatgctggtct
cagccctgcctgaatggtggccaatgcaaagaccgcatcgccgagttcctgtgtgtgtgt
gagccaggatacacgggcctccactgtgagttggaagttgatgagtgccagtcagagccc
tgtaagaatggtggcacctgccgggacctcttgggctcctttgcctgttcctgtcccgag
ggcttcgtggggaccctgtgtgaagaagaagtggacgcctgtgagtcagacccttgtcag
aatggaggagagtgtgaaggtgatggaggttcctacctgtgcgtgtgcccggagggtttc
tttggttaccactgtgagacagccagcgacccgtgcttttccagcccatgtgggagccga
ggctactgcctgcccagcaatggcacccacagctgcacctgcaaagtgagctacacaggc
aagagctgcgaaaaagaattgctgccaccaacctcattaaaggtggaaagggtggaggac
actggtgtgttgatttcttggcaccctcctgaggacgcagccgccaggcaactcattgac
ggctacgccgtgacgtacgtatccttcgacggctcttaccgcaggacagattttgtggac
cgaagtcgttctgcccaccaattgcgggcactagcctccggcagagcctacaatatttct
gtcttttcagtcaaacgcaacgtgaacaacaagaatgatatcagcaggcctgtcatgctc
accacgcgcactagaccgcgtccggtggaaggctttgagatcacgaacgtgacggccagc
accatcacggtgcagtgggctctccaccggctcaaacactccaccgtcagtagggtgcgt
gtctccatccgccagcctggggacctggaagaccgcacggtggagctgaacagcagcgtg
gccaagtacaccttcctggacctgcagccaggagagcggtacatcgtccatgtcacgacg
ctgagtggcatggggacggaagatcacccctcggagagtctggccacagcccccttccac
gtgtggacgaggcctctcccccctcgcaacctcacagcctcccgcgtcacccccacctct
gtgtccatgacgtgggagcagccgcccaccggtgccgtggaggggtacatcatcaacgtc
accaccgcgcagagcgtcaagagccgctacgtgcccaacgggaagctcgtgtcctacacc
gtgcgggacctgctgcccgcgcagcgctaccgcctgtctgtgacagctgtgcagaacaca
gagcagggccaagtgcacagcgagcccatccacctctacgtcaccaccttgcagaaggac
ggggctccagagaggcgctggagccaggccggccatccccgtgtgctgcgcaacaggctg
cccccagccttcctgcctgagctccgcttgctcgcagaccacgacacagctgaggagcct
tcaccagcccccaggttcactgagctggtggatggcagaaggaggatcagtgccaggttc
ggcactttgccaagcaaatccatcaccgtgaagacacagccagaggctcccgtgaggctg
gagaacaccgaggagcccagccggagcagtctggcactgcagatgcgagaggcatggagc
aaaagtatcaggcagaactgctccacaaacccgtgcaagaatggaggcacctgtgtaagc
gagagtgaatcctaccattgtgactgcagcccgggcttcaagggcaggcactgtgagcta
gcctgcaagaaggtgccacactcgtgcacacggctgtactcggaaaccaagtcattcccc
gtgtgggaaggaggcatctgccactacctgtacaagagaatatacaaggtacaccaggat
gtatgctacaaggagagctgtgagagcaccggttccaagaaaaccagcagaaaacgaagc
aacagtcacacactgaagaagccatag
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integrated database retrieval system
