Lagopus muta (rock ptarmigan): 125697841
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Entry
125697841 CDS
T09141
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125697841 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125697841 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125697841 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125697841 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125697841 (COL4A4)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125697841 (COL4A4)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125697841 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125697841
NCBI-ProteinID:
XP_048811449
LinkDB
All DBs
Position
9:14598433..14664343
Genome browser
AA seq
1681 aa
AA seq
DB search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NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaacaaaggattcatttgaacgaattaagtggcttatcagaactgcctggtgg
ctgctgattgttttttcagcacaagaaattgatgggggaggatatgcatacattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcaa
cctggtgagctgggagctcaaggaccaattggatccttgggatatacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaaacacggtgtagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggaccaagaggtccttacggaaaccca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcgtattttggaaaaggaccccca
ggagacagaggtgatcctggcccccctggtgtgcccggacctagaggatcgacaggtaca
acaggcccacctggatacccaggccaaccaggcatgcccggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gatgttggacttcctgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgtttaaaggagaaaagggccaaaaaggactacctgggataccaggatacagagggcca
catggacctaaaggactacctgggaaaggagaaaagggtgaaaaaggcattcctggattg
cctggattgcggggtagccctggttctgacggacctgcaggttttcctggaataaaggga
gaaatgggtgttgctggttttcctgggagacctggctatccaggcatcaagggggatcct
ggagaaaaagggccccgaggtcctcctggagctattggaactccactgcttcctgtgaaa
ggcccaccaggagatcctggatttccaggtcctgcgggtgacatggggtcagttggacct
tctggacctgtgggtctgctaggaagaccaggagatgatggaacaagtctgcctggcctg
ccaggaataagtggggcaccaggacctcaaggttttcaaggtgaccctggttcacctgga
acaggtgaagcaattccaggaagacctggatttcctggaccacctggactaccaggacag
ccaggaagacaaggcttacctggactacctagtataatctgtactgagagagggattcct
ggagaacctggagcaaaaggtcagataggccttccgggtagaaaaggagaaaaaggagaa
aaaggaaatcaaggcctctgctcatgtagtgctggtcctcctggtcctcgtggtatacaa
ggacctccaggtactcaagggaagaaaggacaaatgggttaccctggaagacatggagaa
aagggcgattcaggcttttctggtacagtgggatcaccagggctccctgggacacctggt
cctggaggacaacatggtgaaaaaggagagaagggtgaccaaggaagagtttcaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaaaaggtaac
gatggcagagatggggatttaggattgcctggggaaaaaggagctgagggtgattctgga
gtaccagtaccaggtgataaaggatttcctggagttccaggactccctggagcaaaagga
ccaatgggattgcctggtttggggtttcctggccctccaggagtcagaggtacccctgga
gactttggtgatgatggtaacattgggctgcctggtccaaagggtcagaaaggtgacact
gtgtgtattacatcaccctaccctggaaacccaggtccccctggttttaaaggtgttcaa
gggccaaagggcttaaaaggactccctggtcttcctggacaaaatgggtttgatgggcca
aaaggccagcaaggcaggccaggagcaggaattcctggaccagaaggcttccgaggcaca
gctggtgatcctggtgaagaaggtgaaagaggacctaccattgatggtaaaaatggtgct
ccaggtccacctggcatagatggccagaagggtgttccaggtgatactacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccacctggtgcacaaggagcaaggggt
gacccaggcattcctgggcttcaagggcaacctgggaccccaggatttccgggtgctaaa
ggttttaggggcccagaaggtgatacaggagcaccaggctgtccaggcacccctggtcca
ccatgtgacacaagattaccagggccacctggactcagaggtgccataggcgtgccaggt
tctcaaggcttaccaggctataaaggtcagaagggagacaggggtctagctgggccacct
ggaatcaaaggtctcaagggctctcctggctcacagggccccccaggtcctccagggtcc
cgaggacttccaggacttccaggcaataacggacagcctggcttcccaggtcaaacagga
agcaaagggattcaaggaccccaaggattccctggactcccaggaacacaaggcccaatg
ggaatccctggtgtaaaaggggaagaaggaagtatgggtccacctgggcctagtggagaa
tgtggggatatgggagtgaaaggtgaaagagggcttccaggagatggtggcagcattaac
attcgccttgagaaaggacaaaagggggagccagggtttcctggtgaaaatggatttaga
ggtgaaagaggtgaaaaaggaaatacaggtttcagaggtgccccaggatttccagggaac
agtggtgccccaggacttccaggtgaccatggtgacattggactgatgggatttccggga
tcacgtggtttcccaggaccaaagggctctaaaggaattacaggtttcaaaggactacca
ggtgaccagggtgatgttggcttaccaggaatgcctggaaacccaggactgacaggcccc
aaaggacctaaaggaaagagaggtgacccaactcttctgcttggtccacaaggtcaaaaa
gggtctcctggagatccaggattaccaggattctgtggattcccaggtgagaaaggttca
ccaggtatccaagggcagcctggaagaccaggatccaagggtgagcctggacacccagga
atacctggatttccaggagctacaggtccaccaggattgccaggagaaccaggagaaaaa
gggcaacatggaattttgggatctccagggcttcaaggattaactggatcacaaggtaga
aaaggtcttcctggactgcctggactggatggcttgcatggactaaagggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacctgga
ccaaaaggagagagaggtgaacctggatggcctggtatttccattccaggcacccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccattggacctagg
ggaccgtctcccagtagcgcccctcctggtcttccaggtgatcaaggaccaccgggttta
gatggcatcagaggtcagcctgggaatcctggtcctgctggagagactatctttgtgcga
ggagatccaggtgatgttggtattgaaggggcaccaggcattcctgggcaccgagggcta
caaggagccagaggtcttccaggaaatcaaggaagagaaggtccaaagggtccaatggga
atccatggctcgcggggtccacctggtgctgtaggacaaccaggagaccaaggttttcaa
ggaaaacctggtcctagaggtcccacaggattcataggtgatcctggtgaaccaggaaaa
acagatgactcatgtcctacaatcccagggcctcctggggaagcaggacatagaggagat
gatggttcaataggattaccagggccgataggtcaccctggaccccaaggaaggaaaggt
gaagaagggtcatgtggcctgccaggtcaagatggcttaccaggagcacctggaccacca
ggtgaccaagggcatgtgggagagcaaggatacactggaccacaaggtccacctggccag
actggtatcccaggaccaccagggccccatattagatcttcaagtggattcttgctcatc
cttcatagtcagtcagacagagaaccactttgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaagatcttggtctg
gcaggatcttgtcttcctgtgtttaataccatgccctttgcttactgtaacatcaaccaa
gtttgttactatgccagccgaaatgataagtcctactggttgtcaagtgccgctccctta
ccaatgacaccactctctgaagaagaaatacaaccatacataagcagatgtgctgtatgt
gaggctccagctcaagcagtagcagttcacagccaagatcagtcgattcctccgtgtcca
atgaactggagaagtctttggataggatattcttttctgatgcacactggatctggtgat
caaggaggtgggcagtcccttatgtcaccaggaagctgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacttgtcagttttttgctaatgaatacagc
ttctggctaacaacagtgatgcctgacttgcagtttgcatcagctcccttgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgtcaggtatgcctgaagcat
gattaa
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