Lagopus muta (rock ptarmigan): 125697842
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Entry
125697842 CDS
T09141
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125697842 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125697842 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125697842 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125697842 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125697842 (COL4A3)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125697842 (COL4A3)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125697842 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125697842
NCBI-ProteinID:
XP_048811452
LinkDB
All DBs
Position
9:complement(14539191..14598878)
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AA seq
1669 aa
AA seq
DB search
MAGGGCPQRLALLLLLALPWPGRAAAENCVCKGKSPCFCDSVKGNKGEKGFPGVPGPPGH
RGFPGPEGPPGPQGPKGSPGPVGLAGPKGIRGVPGIPGFSGPPGLPGEPGIAGHPGRSGV
PGCNGTKGDRGFPGPPGRRGAPGIPGIAGIKGDKGCPADGYDQGYGAKGDPGLPGMPGHQ
GAQGVQGYPGETGPRGLPGTSGIPGRPGPPGPKGLMGMKVIGTKGRKGDTGLTGPPGPPG
TVIVTLSGPDNMTDLKGEKGEKGSRGLPGPMGFTGPTGDSQSEKGDQGEPGAQGKPGKEG
APGLPGLPGQNGEQGKPGLAGRQGAKGVKGNTGPPGACGQTEYYDVVGEKGDAGPPGPPG
PKGQRGMPGPQGPPGDAGRPGVSRPGLRGPPGFPGPKGTKGEKGQVGSCIIGPPGLPGIT
GRIGSVGLPGPPGEPGRVTFRTGLPGLPGQPGCAGPPGPPGDMGMKGDEACMCTDCSYIP
GTPGLPGSPGPRGQDGIPGREGAPGPKGAPGSPGAPGFPGAQGPPGFKGDQGRKGSKGEP
GYVYPEGPKGEQGDPGPRGDKGRKGSSGFLGRPGSKGYKGSKGEEGLAGSKGDRGQPGLP
GNPGFPGEMGLPGLPGYGPQGIRGVKGSKGLPGPHGLPGEAGLKGETRRIAPLPALPGPQ
GPDGLPGPPGVPGRIGTSGQPGDVGHPGPTGDTGFPGLGFPGNPGPKGDKGLPGSRGAPG
CEGKIGEPGRSGNLGQPGEKGDPGIIIPGEPGKLGSPGGRGIPGPKGDTGFPGLPGLPGH
AGRDGNSGLRGDPGSSGVPGDPGFPGKPAECLTGLPGLPGAEGATGPPGRRGSLGSKGKL
GPPGLGIPGIDGKPGEPGLIGLLGNTGLPGLKGQAGRPGVFGVPGPRGEPGIMGPLGIPG
PPGRIGSPGNPGIRGSFGSPGLKGRKGFLGAQGEPGDKGFPGPSETLVVIGNKGEQGSKG
VQGRMGLKGEKGDAGVQGSPGLIGSEGVPGVPGVKGFMGLPGIPGGQGFPGAPGNKGNMG
IPGQKGQKGSPGFPGTSGDPGPTGYGGFPGEKGDPGHPSPGLPGEPGPKGDPGAPGALGR
KGEKGSQGQPGHKGAPGLPGFRGETGVAGNPGRLGLPGDVGVKGQQGHPGQQGVTGPPGA
AGYPGENGLAGERGNQGQDGMPGAPGLKGEPGAPGRGIPGLQGVPGRRGVKGDMGLPGFP
GPPGMKGHQGDQGPIGPPGLMGLPGFQGATGMAITGPKGNRGIPGADGRPGIPGFQGLPG
LPTMSIKGSKGVRGADGIQGPMGPAGDSGPPGPKGVEGRPGYPGARGDPGFLGFPGVKGE
KGNQGPPGPRGAEGPRGPKGQPGPPGVSGRIFSVPGSKGPPGLPGIPGTPGDQGIQGIPG
LQGPKGVKGLPGSFGRPGQPGQPGPKGDRGFPGQRGQPGLIGFPGLQGLPGSPGTTTTGP
TRRGFIFTRHSQSTKIPSCPPGTSQIYIGYSLLFVQGNERAHGQDLGTAGSCLQRFTTMP
FLFCNTNDVCSFASRNDYSYWLSTATAMPVDMAPISGKALEPHISRCIVCEGPAMVIAVH
SQTTAVPACPGGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGRGT
CNYYTNSYSFWLASLNPRRMFRKPMPQTLKAGELENVISRCQVCMKRPV
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgggggctgcccacagcgcctggcgctgctgctgctgctcgccctgccgtgg
ccgggccgcgccgcggctgagaactgtgtatgcaaaggtaaaagcccctgcttttgtgat
agcgtgaaaggcaataagggtgaaaaaggcttccctggtgttccaggaccacctggtcat
agaggctttccaggtccagaagggcctccaggaccacagggaccaaagggttcaccaggg
cctgtgggcttggctggacccaaaggtatacgaggagtcccaggaatccctggattttca
ggtcccccaggccttccaggtgaaccaggaattgctggccaccctgggcgttcaggtgtt
ccaggttgcaacggcacaaagggtgatcggggtttcccaggtcctccaggtagaagaggt
gctccaggcattccaggtattgctggcatcaaaggagataaggggtgccctgcagatgga
tatgaccaaggatatggtgcaaaaggtgatcctggattgccaggaatgcctgggcatcag
ggtgctcagggtgttcaaggatatcctggggaaactggaccacggggccttccaggaact
tccggtataccagggagaccaggacctcctggacctaagggtcttatgggaatgaaagta
ataggaaccaaaggaagaaagggagacactggattaactggaccgcctggaccaccagga
actgttattgttacattaagtggaccagacaacatgacggacttgaaaggagagaaagga
gaaaaaggatcaagaggacttccagggccaatgggatttacagggccaactggtgattct
cagagtgaaaagggtgaccaaggagaacctggagcacagggtaaacctggtaaagaaggt
gctccgggtctacctggattaccgggacaaaatggtgaacagggcaaaccaggactggct
ggtagacaaggagctaagggtgtaaaaggaaacactggtccacctggagcttgtggtcaa
acagagtattatgacgtagttggtgaaaaaggagatgcaggacctcccggacctccagga
cccaaagggcaacgtggcatgcctgggccacagggtcctcctggagatgctggtagacca
ggtgtgtcaagacctggtctgagaggtcccccaggatttcctgggccaaaaggaacaaag
ggagaaaaaggacaggtgggctcgtgtattataggccctccaggactgcctgggattact
ggcagaattggttctgttgggttgccaggtcctccgggagaaccaggtagagtaactttt
agaacaggcctaccaggactccctggacagccagggtgtgcaggacctccaggacctcca
ggagacatgggcatgaaaggtgatgaagcttgcatgtgtactgattgcagctatattccg
ggaacacctggtctgcctggttctcctgggccacgtggccaggatggcatccctggtaga
gaaggagcaccaggtcccaaaggagctccaggttctccaggtgcaccagggtttccagga
gctcaaggacctccaggttttaaaggagatcaaggacgtaagggctcaaaaggtgagcca
gggtatgtgtatccagagggaccaaaaggggagcaaggagatccaggacccaggggagac
aaagggagaaagggatcaagtggatttctgggaagacctggctctaaaggttacaaaggt
tctaaaggtgaagagggattggctggttcaaaaggagatagaggacaacctggattgcct
ggtaaccctggttttcctggagagatggggcttcctggactgccaggatatggaccacaa
ggaataagaggtgtcaaaggctctaaaggactgcctggtccacatggattgcctggagaa
gctggtctgaaaggagagaccagaaggatagctccattgcctgcgttgccaggacctcaa
ggaccagatggcttacccggacccccaggagtgcctggtaggattggaacaagtggtcag
ccaggtgatgtggggcatccagggccaacaggtgacacaggctttccagggcttgggttt
cctggaaatccgggcccaaaaggagacaaaggacttcctggaagcagaggggcaccaggt
tgtgaaggaaagattggagagccaggccgctctggaaatctaggacaaccaggagagaag
ggtgacccaggcataattattcctggagagccaggcaaactaggttcaccaggaggtcgt
ggcattcctggcccaaaaggtgatactggatttccaggacttccaggcttaccagggcat
gctggacgtgatggcaatagtggcctaagaggagatccaggctcatctggtgttcctggg
gatccaggttttccagggaaaccggctgaatgtcttactggcctgccaggtttgccaggt
gccgagggagctacaggcccaccaggaagaagaggttcactaggttcaaaaggcaaacta
ggtcctcctggtttgggtatcccaggaattgatggaaagcctggggaacctggattaata
ggtctcctgggaaacacaggattacctggtctcaaggggcaggctggaaggccaggagtc
tttggtgtgccaggccctagaggagagccaggtataatggggccgttaggaattcctgga
ccccctggcaggattggaagtccaggcaaccctggtatcagaggttcttttggctctcca
gggctaaaaggaagaaaagggtttcttggagcacaaggcgaaccaggtgacaaaggtttt
cctggaccatctgaaaccttggttgtgattggaaataaaggagaacaaggctcaaaagga
gttcaaggaagaatgggcctaaaaggagaaaaaggagatgcaggtgtccaaggttcccca
ggtcttattggatctgaaggagtacctggtgtaccaggtgtcaaaggatttatgggtctt
ccagggattcctggaggacaaggatttcctggtgcaccaggaaacaaagggaacatggga
attccaggtcaaaaaggacagaagggatctccgggctttccaggaacttcgggtgaccct
ggtccaacaggctatggtggctttccaggtgaaaaaggagaccctgggcacccctctcct
ggactcccaggagaacctggtcctaagggagatccaggggctcctggggccttgggcagg
aaaggagaaaaaggatcccaaggtcagccaggacataaaggagcaccaggactacctggg
ttcagaggagaaacaggagttgctggaaatccagggagacttggacttcctggagatgtt
ggtgttaaaggacagcagggccacccaggacaacagggtgttacaggtcctcctggtgct
gctggataccctggagaaaatggacttgctggtgaaagaggtaatcagggtcaggacggt
atgccgggtgccccaggactaaagggagaaccaggagcaccagggagaggaatccctggc
cttcaaggtgttcctggtcgtagaggagtcaaaggggacatggggctgcctggttttcct
gggccaccaggtatgaaaggtcatcagggtgaccaaggacccattggacctcctggctta
atgggattacctggatttcaaggagcaacaggcatggcaattactggcccaaaagggaat
agaggcattcctggtgcagatggaagaccaggtattcctggttttcaagggctgcctggt
cttcccactatgagcataaaaggaagcaaaggtgttaggggagcagatggcatacaagga
ccaatgggcccagctggtgacagtggtcctccgggtccaaaaggagtagaaggtcggcca
ggttatcctggtgctagaggggatcctggctttcttggatttccaggtgtaaaaggagag
aagggtaatcaaggaccacctggaccacgaggggcagaaggaccaaggggaccaaaaggc
caacctggtccacctggtgtctctgggagaatattctctgtcccagggagcaaggggcct
cctggactgccaggaatcccaggcacaccaggtgatcaaggaattcaagggattcctgga
ttacaaggacctaaaggagtaaaaggtctaccaggaagttttggtcgtccaggtcaacca
ggacagcctggtccaaaaggagacaggggatttccaggacaaagaggacaacctggattg
attggcttccctggcctacagggattgcctggatcaccaggtactaccaccactggtcca
acaagaagaggttttatcttcactcgacatagtcaatcaacaaagattccttcatgccca
cctgggacatcacaaatctacattggctattcactgctttttgtacaaggaaatgaacga
gcgcatggacaagaccttggaacagctggtagctgcttgcagagatttaccaccatgccg
ttcctattctgcaataccaatgatgtgtgcagttttgcttctcgcaatgactattcatac
tggctgtcaactgcaacagcaatgccagtagacatggcaccaatttctggtaaagcactg
gagccccatataagcagatgcattgtctgtgaaggacctgcaatggtaatagcagttcac
agccaaacaactgcagttcctgcatgtccaggaggctggatatctctctggaagggattt
tcttttgttatgtatacaagtgctggctcagaagcttctggccaagcactggcgtctcct
ggatcttgtctggaagaatttcgagccatcccattcatagagtgccatggcagggggacg
tgcaactactacacaaactcctacagcttctggttggcatcactaaatccaagaagaatg
ttcaggaaacctatgccacagacattgaaagcaggagaactagaaaacgtcatcagccgt
tgtcaggtctgcatgaagagaccagtctaa
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