Lagopus muta (rock ptarmigan): 125698016
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Entry
125698016 CDS
T09141
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125698016 (SPG11)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125698016 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Kbp-5
Motif
Other DBs
NCBI-GeneID:
125698016
NCBI-ProteinID:
XP_048811769
LinkDB
All DBs
Position
10:complement(624266..650410)
Genome browser
AA seq
2438 aa
AA seq
DB search
MAGARRELRVLLAARPGRERDAVQGAARARLSAGQDALGSLSLRDGIYLESLGPGGGGRA
RSSVLPGAWADFVWESTAEYDPQADKTKILAVSESHDLFVYEFTREEGKCSPNPLHSCEE
GTLKKLLEANSISLSSILSLRILSFKDNRCILLLNSFIVMHITFPGESSSLETCDCFTLD
LPPPVLERITDINFCRGILFFLDSSGWIYVFDSFDGANLAHIDVSLCLGGVQEGDRSSAI
TSPLAAVKVSYDLSVAVIISASNNACSVDLNTYFRQFPGHLICKRDPESLPLKPPEGVDE
DDLASSDYSMELLSSPFRTDRSWKAHLSSLRSTIRKRGSRSPHLLCDVNLPWYQYFTHLE
DHDPLIYETHEEALAVAPKAFPRVLPKLSQSAGTKLSDAGRRWKQILPVQLSHRVVKLEC
KCVTGAKALFVILADDKALTLALWDFESQDVTHHQFSKNSVYVDCNEDVPLCLLLTERGL
SLILFGLTQEEFLNRLMIYGSAGVVDAVCHLNGWGRCSIPVHALEAGLENRQLDTVDLFL
KSKESLFNLPALRSEAQQSADGASRSFLKNLQELRPALNLLCSAIRANDMEPQSKHFSEQ
LLNLTLTFLSKQLEEVFVHTEEPDGHLQKAAEILADYIIELRTFLKNYPRSQINATDVES
DSDEDLPAIEESQVWEKLTPEEVIAEAILSNKMPEAQTFFRMRQHPAQSLQELIRTGLDL
VYGRLLKGNTREASALLKNMGFDVKQQLHKICFYTADKHVRDLLVKVLQEENYFSEKEKK
MIDFVHQVESLYSESFQENKEMQSLSSVKNWRREQDSAKHLATLESLLDHDGRRVPSREV
RVMLNWAQWWDELLQDLILLPRKQGQGLATCNPEALWMHLTARHDWLNMASWIEEFEPSR
GSCAQSKWPPLTAGIVDQKTLCSGYMRNDVLNELARKGIFVRSELEDFELLLQRLVSLGG
VLQNPHPVPKHSATSGLDFHARFVLHCLEHNLQYMLYTYLDYYSLTPSNCPILDDKELHE
AHPWFEFLVRCRGVASNPRGRSLASLSSCSEDPKMIFQASLANAQILIPSNQASVSSVLL
EGRTLLALATTMYAPGGIDQVLQNEDTEKPLKKVDPQLLKMALSPYPKLRAALFPPCTSH
GILPPDISLYHLVQSLVPFDPSKLFGWQSTNTLAVSDASSDLPHFSCPELVNKYAVMERL
DFLYYLRHGRPSFAFGTFLVQQLVKSKSPKQLVQQAGNEAFLLGLSFFNTPSVAAACVCF
LELLGLSSLKLRVDIKVANMIFSYKTRNEESQHNQIRESLVEQLMRLADGEKAATDEVLK
SLEEAFWDSIEHQGIKRTSSDSRQQWSLVMQFCKLHNTKLSTSYLKECAESNDWLQFIIQ
AQLYGYKPDEVTSVLEGFAPVLQHHLMLALEKSPFLRGAAGGPGGSAGSRRADGLFQILL
RCQQSPGASCHLLAEGLREHAPILSVLAACFPEADVIHCLCVWIITSVDSVTRSEATKHV
QSSVENHKWDLHDLSLIWKVFLRKQKCQTLIRGFQLFLKDSPLLHILEMYDLCMNCKKYS
EAKTKLDEFQKLLTNLKAAEGPAASQVPVQWLESQALFLLELMLQQCRTEYELGKLLQLL
AATDNLLLDGPYVKKLCALSEILKGSSVPINPSMLTRFSPETFQNECRSILEQLQEKGLF
SLARKVAELAELPADSVVTREVLRDLQLLRDAGEWDQEQIRMKFWKKCNDSFMKNCISSK
AASDFFLNQADVVFESSVPEKMNSIAERHLLLTLAGHWLAKDASMALDKLEEIEKQIWIC
RITQQTLSAAEGSGRSRRSSSCATANGDFTFDNLAEEFSFSKLPALNAPSYLNVEGLEFG
EHQQTLADDEEEALRFLLGCLLDEGSVHEASRVCRYFHFYSRDVSLVLHCRALASGEADL
DRLHTDIQALVAAEKTQESSASQQSRVPSTSSSEDWTHIADPSLDDQIVLSLKALTDECV
HGRNYCRQVLCLYELSQELNCSYSEMSALDPEKVLRAILSSQQAERCRRAQAFITTQGLQ
PETVAELVAKEVMQELLASSEGKGQKQVSNPAAESQAFLQLAKLCQDHTLVGMKLLEKIS
SVPRGELSCITELLILAHHCFSLTCHMEGITRVLQAARLLTDEHLAPNDEYGLMVRLLTG
IGRYNEMTYIFELLHEKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCF
SMCREIGENHEAAACIQLKLIESQPWEESLQDVANLKKLLMKALTLFIDAAESYSKDSCV
RQALRCRCLTKLITLQLHFLSAGQSTMLINRNRQNLMECIVSLPRFYQAAVVAEAYDFVP
DWAEVLYQQVITKGDFSYLEEFKQQRLLKPALFEEIAKKCKQHPPTDAALRNLKKLLAYC
EDISTYYRLAYENKFYDVVNVLLKDAQTGCCLNDMLSN
NT seq
7317 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcgaggcgggaactgcgcgtgctgctggcggcccgcccgggtcgggagcgg
gatgccgtgcagggcgcggcacgggcccggctgagcgcggggcaggacgcgctgggcagc
ctgtcgctccgtgacgggatctacctggagtccctggggccgggaggaggcggccgggcg
cggagcagcgtgctgccgggagcgtgggctgacttcgtgtgggagagtacggcggagtac
gatccgcaggcagacaagacgaaaatactggctgtgagtgaaagtcacgacctgtttgtc
tatgaattcaccagagaagaggggaaatgcagcccgaatcccctgcacagctgtgaggaa
ggcactctgaagaagctcctcgaggctaacagcatcagtctttcttcaatcttgtctttg
aggatactgtcttttaaagacaacagatgcatacttctgctgaacagcttcattgttatg
cacattacttttcctggagagagttcatcattggagacgtgtgactgctttacccttgat
ttgcctccaccagttttggaaagaataacagatataaacttctgcagggggattctgttt
ttcttggatagttctggctggatttacgtatttgattcttttgatggtgcaaatctagcc
catattgacgtgtcgctctgcctgggcggggtgcaggaaggggacaggagttccgccatc
acatcaccgctcgctgcagtcaaagtgtcgtacgatctcagcgttgctgtgatcatcagt
gcttccaacaatgcctgttctgtggatctaaacacgtacttcagacagttccctgggcat
ttgatttgtaaaagagatcctgaaagccttccactgaagccacctgagggagttgatgag
gatgaccttgctagttctgactacagtatggagctgctgtcctcgcctttccgcacagac
aggtcatggaaggcacacttgtcctccctgcgcagcacaatcaggaaaagaggatcccgt
tccccacatttgctgtgtgatgtgaacttaccttggtatcagtattttacccaccttgaa
gatcacgatcccttaatctacgagacccacgaggaggcgctggccgttgctccaaaggct
tttccacgcgtccttcccaagctgtcgcagagtgctggcacgaagctcagcgatgcgggg
cggcggtggaaacaaatcctgcctgtgcagttatcacaccgagtggtgaaactggagtgt
aaatgtgtgactggagccaaagcactgtttgtgatcctggcggatgacaaagcactgacg
cttgccctctgggatttcgagtcccaagatgtaacacaccaccagttcagcaaaaatagt
gtttatgtggactgcaatgaggacgtgccgttatgtctgctgctgacagagcgtggcctc
tccttaattctgtttggtttaactcaagaggagtttttgaacagactgatgatctatggc
agtgctggagtcgtggatgctgtgtgtcacctcaatggatggggacggtgttctattcca
gtgcatgcactagaggctggcttggaaaatcgtcagctagacacagtagatttgttttta
aaaagcaaagaaagtcttttcaaccttcctgcgctccgctccgaagcccagcagtctgct
gacggggcatcccgctctttcctgaaaaatttgcaagagctgagaccagccttaaacttg
ctctgctcagcaatcagagcgaacgacatggagccgcagagcaaacacttttctgagcag
ctgctgaacctcacgttgactttccttagcaagcagcttgaagaagtttttgtccacaca
gaggagcctgatggacacctgcagaaggctgcagagattttagctgattacatcattgaa
cttaggacgtttctgaaaaactatcctcgatcccaaataaatgccacagatgtagagagc
gattctgatgaagacctgcctgcaatagaggaaagccaggtgtgggaaaagctgacacct
gaggaagtcattgctgaggccatcttaagcaacaaaatgccagaggcccagaccttcttc
cgtatgcggcagcatcctgcccagagccttcaggagctcattaggacgggtttggatctg
gtctatggccgtctgctgaagggcaacaccagggaggcctcagcactcctgaagaacatg
ggttttgatgtgaagcagcagttgcataagatatgtttctacacggctgataaacacgta
cgagatttgctggtcaaagttttacaagaagaaaattatttttctgaaaaagagaagaaa
atgatagactttgtgcatcaggttgaaagcttgtactcggagtccttccaagaaaataaa
gagatgcaatctctttccagtgtgaagaactggagacgggaacaagactctgccaaacat
ttggccactctggagtcactgttggatcacgatggacgccgggttcccagcagggaggtc
agggtgatgctgaactgggctcagtggtgggatgagctccttcaggatctgattcttctc
cccagaaaacaaggccaaggacttgccacgtgtaaccctgaggctctttggatgcacctg
acagcccggcacgactggctcaacatggcttcatggatcgaagaatttgagcccagccga
ggttcgtgtgcacagagcaaatggccgcccctgactgcaggcattgttgaccagaagacg
ttgtgcagtggctacatgagaaatgatgtgttgaacgagctggccagaaaagggattttt
gtccgttctgaattggaagattttgaacttctgctccaaagattggtttcccttggagga
gttctgcaaaatcctcaccctgtcccaaagcacagcgctacgagtggcttggacttccat
gctcgttttgtccttcactgcttggaacacaatttgcagtatatgttatacacataccta
gattactacagcttaactccttccaactgccctatcctggatgacaaggaactgcacgaa
gcacatccctggtttgaattcctcgtgcggtgccgaggggttgccagtaacccacgaggt
aggagcctggcctcgctcagcagctgctctgaggatccaaagatgatttttcaagcgagt
ctagcaaatgctcagatcttgattcctagtaaccaagccagtgtgagcagcgtgctgctg
gagggccgtacgctgttagctcttgcaaccaccatgtatgcacctggaggcattgatcag
gttcttcagaatgaagatacagagaaaccactaaagaaagttgatcctcagctcttaaaa
atggcgttgagcccttaccccaaactcagagctgctctttttcccccctgcacctctcat
ggaattctgccacctgacatctccctttaccaccttgttcagtcattagtgccctttgat
cccagcaagttgtttggctggcagtcgacaaataccctcgctgtgtcagatgcatcaagt
gaccttcctcatttttcatgccctgaactggtgaacaaatacgccgtaatggaacgactg
gacttcctgtactacctgcgccacgggcggccgtcgtttgccttcggtacatttttggtc
cagcagttggtcaagagcaaaagccccaaacagttggttcagcaagcaggaaatgaagcc
tttcttctaggcctttctttcttcaatacgccttcagtagcagctgcctgcgtgtgcttt
ctggagctgcttgggctcagcagcctcaaactgagagttgacattaaggttgcaaacatg
atattcagttacaaaaccagaaatgaggagtctcagcacaatcaaataagggaatctttg
gttgaacagttaatgaggttggctgatggtgaaaaagcagcaacagatgaagttcttaaa
tccttagaagaagccttttgggattcaattgagcatcaaggaataaagaggacatccagt
gactccagacagcagtggtccttggtgatgcagttctgcaaactccataacacgaaactg
agcacctcctacctaaaggagtgtgctgaatccaacgactggctgcagttcatcatccag
gcccagctgtacggctataagcccgatgaggtcacgtctgtgctcgaaggcttcgctccc
gtcctgcagcatcacctgatgctggctctggagaagtccccatttctgcgcggcgctgcg
gggggccctgggggcagcgctgggagcaggcgtgcagacggtctcttccaaatccttctc
cggtgtcagcagagccccggtgcttcgtgtcaccttttggctgaaggactgagggaacac
gctcccattctgagtgttctagcagcgtgtttccctgaggctgacgttattcactgtctg
tgtgtctggatcattaccagtgtggatagtgttaccagatctgaagcaacaaaacacgtt
cagagctcagtagaaaatcacaagtgggatcttcatgacctgtcacttatctggaaggtg
tttttaagaaagcaaaaatgtcaaacacttataaggggattccagctctttttaaaggat
tcccctttactgcatatactggagatgtacgacctgtgcatgaactgtaaaaaatacagc
gaggctaaaaccaaactggacgagtttcagaaactcctcacaaatcttaaggccgccgaa
ggaccggcagcttcacaagtccctgtgcagtggctggaatcacaggctttgttccttctg
gagttgatgctgcagcagtgcaggacagagtacgaattgggaaagctcctacagctgctt
gctgcaacggataatcttctgcttgatggcccatatgtgaagaaactctgtgcgctcagt
gagatcctgaagggttcctccgtgcccataaatccctccatgctgaccagattcagccca
gaaacgtttcagaatgagtgcagatcgattctggagcagctccaagagaaaggactgttc
tctctggctcggaaggtggcagagctggctgagctgcctgcagacagcgtggttacacga
gaggttctaagagatctgcaacttctaagagacgcgggagagtgggatcaagagcagata
agaatgaaattctggaaaaaatgtaacgacagcttcatgaaaaattgcatctccagcaaa
gctgcatcggatttctttttgaatcaggccgatgtggtgtttgaatcctcagttcctgag
aagatgaacagcattgcagagagacatttgctgctgaccctggctggccattggctagcc
aaggatgcctcgatggcactggacaaactagaagaaatagagaaacagatctggatttgt
cgtatcacacaacaaacgctgtctgcagctgaggggtcaggcaggtcgaggcgctcctcc
tcctgtgccacagcgaatggggatttcacttttgataacttggctgaggagttttctttt
tcaaagctgcctgctctgaatgcacccagctacttgaacgtggagggtctggaattcggg
gagcatcagcagaccttggctgacgatgaggaggaggcgctcaggtttctgctcggatgc
cttctcgatgaaggaagcgtgcacgaggccagccgtgtgtgtcgctacttccacttctac
agcagagatgtttcactggtactgcactgcagagccctggcctcaggggaggctgacctg
gacagactgcacacagatattcaggctcttgtagcagcagagaagacgcaggaaagcagt
gcatcacagcagagcagagtcccgagcacatcaagctcagaggactggacgcacattgca
gacccatctctggatgatcagattgtcctcagcctgaaggctctcacagatgaatgtgtc
catgggaggaactactgcagacaggttctctgtctgtacgaactttctcaggaactgaac
tgctcctacagtgagatgtcagcccttgaccctgaaaaagtgcttcgagcaattctgtca
tcgcagcaggcagagcgatgcaggagggctcaggcattcatcaccacgcagggcctgcag
cccgaaactgtggcagagctggtggccaaagaagtcatgcaggagctgctggcctcttcg
gaaggaaaaggacagaagcaggtttccaaccctgcagctgagagccaggcgttcctgcag
ctcgccaagctgtgccaggaccacacactggtgggcatgaagctgctggagaaaatttcc
tctgtgccacgtggggagctgtcatgcattacagaactgctgattttggcccatcattgc
tttagtctgacttgccacatggaaggaatcaccagggtcctgcaggcagcacgacttctc
acagatgagcacttggcacctaatgatgagtatggacttatggttcgtcttctcactggg
attggcagatacaatgagatgacctacatatttgagctgctgcacgagaagcattacttt
gaggtgctcatgagaaagaagttagacccgagtgggacactgaagacagctctgctggat
tacatcaagcgctgccgcccaggggacagtgagaagcacaacatgatcgccctgtgcttc
agcatgtgccgggagattggggagaatcacgaggctgctgcttgcatacagctgaaactg
attgagtctcagccgtgggaggagtctcttcaggatgttgcaaacttaaagaaactgctg
atgaaagctctgaccctcttcattgatgcagcagaaagttactctaaggactcctgtgtc
cgccaggccctgcgctgccgctgcctcacgaagctcatcaccctgcagctgcattttctg
agcgctggtcagagcaccatgctgatcaacaggaacaggcagaacctgatggaatgcatc
gtgtccttgcctcgcttctatcaagcggctgttgtggccgaggcgtacgacttcgttcca
gattgggctgaagttctgtaccaacaagtgatcactaagggagacttcagttacttggag
gaatttaaacagcagagactgctgaagcctgccctgtttgaggagattgctaagaagtgt
aagcagcacccccccactgatgctgctctgagaaatctgaagaagctgctggcttactgc
gaggacatctccacgtactacagactggcctatgagaacaagttctacgacgtggtcaat
gtactcctgaaggacgcacagactggatgctgccttaatgacatgttatccaactag
DBGET
integrated database retrieval system
