Lagopus muta (rock ptarmigan): 125698097
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Entry
125698097 CDS
T09141
Symbol
BLM
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03440
Homologous recombination
lmut03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125698097 (BLM)
03460 Fanconi anemia pathway
125698097 (BLM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmut03032
]
125698097 (BLM)
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125698097 (BLM)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125698097 (BLM)
DNA replication proteins [BR:
lmut03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
125698097 (BLM)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
125698097 (BLM)
Bloom's syndrome complex (BTR)
125698097 (BLM)
FA (Fanconi anemia) pathway
125698097 (BLM)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
BLM_N
BDHCT
RecQ_Zn_bind
Helicase_C
HRDC
RQC
ResIII
UCC1_N
Motif
Other DBs
NCBI-GeneID:
125698097
NCBI-ProteinID:
XP_048811953
LinkDB
All DBs
Position
10:462403..478051
Genome browser
AA seq
1372 aa
AA seq
DB search
MAAVPQNNLREQLRLHSARGALSKVPPARSRPAAFTFRRTHSPAAGPAALRDKDVNTSLR
PGGVARLKDLRAGPPGARLAPPGPAGSSVPALGAPSGSLSVSSSSSGPAASTGDEWDDMD
DFDLSGFEKFSRPAVPIPKGPRTPQGPAVCVSKARGDAGPQEHGAEVRCSQGSSRGSVIS
LGDAGAAAVLSSSGVEEARAATNDGSGESQKPSNGEQSGRLEQGDVGNELLAAMELEEDD
YLDVVPPSPEEEPPSFSPSVRSVSNIFKESPTGGRSAVNGTEPELMAPKQPAAEEDSSAE
LADGGLHLEQRLYSVMEEICKLVDAIPLHELMSVSCAKELLQQRELRRKLLADSVALNTS
SMNGPASWKACVQQDPSSRPGTPPCAGPARAVGSVGSTPRSTHLPSVLSRTVNSSGFSTV
RNQTLDNSDTSHALKETDQDVICLEDAALPSPKVNGKGSASLSRPSEASFNGSWCEKPAG
RGSGNWCVPTRPTASPALKAQHAAPAGAPASGCSGANDADLDLDHFDIDAFDEGWDDAVA
PEAPPAACWQPLKEGSAPLSCRLLAAAAGSAPGPRPTAPTSGCGVTAKSGSEPLVHNPAH
ERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL
PACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKIYMQLSKKDPVIK
LLYVTPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKF
HAVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEW
IKKYHPHDSGIIYCLSRHECDTTAAMLQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQ
VICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRL
RRLILMEKDGNSQTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEV
ICDNCSRKKDYKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSGRYTLNMMVDIFLGA
KSAKIQSGIFGKGAAYSRHNVERLFRKLVLDKILDEDLYITANDQAVAYVVLGEKAQAVL
NGLLQVEFHETENASAIRKQRASVTKMSQREEMVKKCLGELTDTCKTLGKIFDVHYFNIF
STSTLKKIAETLSSDAEVLLQIDGVTEDKLEKYGAEIMKVMDKYSEWTTPEDAACGSADV
APGSAGTAGSEEEAEDNVVTSSYFGGNANQRRKRKRLPNFAESKRKKTSGAGSQQFYSRG
AKCRRTRRAPGSRAAAPAHSSAGRGARTQLGIMAPPRPNSRHFLQPSYAVLQ
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtaccgcagaacaacctgcgggagcagctgcggctgcactcggcccgcggc
gccctcagcaaagtgccgcctgcgcgcagccggcccgcggccttcaccttccgcaggacg
cacagcccggccgccgggcccgcggcgctgcgtgacaaggacgtgaacacctcgctgcgc
cccgggggcgtcgccaggctcaaggatctccgtgcggggccgcccggtgcccgcctggcg
ccgccgggacccgcggggagctccgtgcccgccctcggggccccgtccggctccctgtcc
gtgtcctcgtcctcgtcgggccccgctgcctccacgggcgatgagtgggacgacatggac
gacttcgacctgtcgggcttcgagaagttctccaggccggccgtgccgatcccgaagggc
ccaaggactcctcaggggcccgctgtgtgtgtcagtaaggcgcggggtgatgcggggccc
caggagcacggggccgaggtgcgctgctcacagggctcctcacggggctctgtcatctct
ctgggcgatgctggagctgctgctgtgctttcgagcagtggggtggaggaggctcgtgca
gctacgaacgatggaagtggcgaaagccagaagcccagtaatggtgagcaaagcggccgg
ctggaacagggtgatgttggcaatgagctgctggcagccatggagctggaggaggatgat
tacctggatgtagttccaccctctccagaggaagagccgccttccttctccccatctgta
agaagtgtgagtaatattttcaaagaatcccctactggaggaagatcagcagttaacggc
acggagcctgagctgatggcaccaaagcagcctgctgctgaggaggactcgagtgcagag
cttgcagatggaggcttgcatttggaacagcgactctacagcgtcatggaagagatctgt
aagctggtggatgccatcccacttcatgagctcatgtctgtctcatgtgcaaaagaactg
cttcagcagagagagctccggagaaaattgttagctgattccgttgctttgaacacaagt
agcatgaatggtcctgcaagttggaaggcgtgtgtgcagcaagacccttcctcccgtcct
ggtacgccgccgtgtgccggccctgctcgggctgtgggttctgttggcagcacaccgaga
tccacgcacctgccatccgtgctctccaggactgttaactcaagcggtttttctacagta
aggaaccaaacgcttgataactcggacacttctcatgctttgaaggaaaccgaccaggat
gtcatctgcctagaagatgcagcacttccttcccccaaggtgaacggcaaaggcagcgcc
tctctcagccgtccctcggaggcgtcattcaatggcagctggtgtgagaaacctgcaggg
agaggcagtgggaactggtgtgtgcccacgaggcccactgcaagccctgctctgaaagcc
cagcacgcagcccctgctggcgctcctgcgtcgggctgctcaggtgccaacgatgcagac
ctcgatctcgaccactttgatatcgatgcctttgatgagggctgggacgatgctgtggca
cccgaagcgccgcctgcggcctgctggcagccgctgaaggagggctctgcccctctgagc
tgcaggctgctcgctgcggccgctggctctgctccgggcccacggcccactgctcccacg
tcaggatgtggggtcacagcaaagagcggctcagagccactggttcacaaccccgcacac
gaacgtttcagggggatgaaattttcccattctgaagaaatgttgaaaatatttcacagg
aagtttggtttgcactctttccggacaaatcagctggaggccatcaatgctgctctgctg
ggagaggattgtttcatcttaatgcccactggtggtggtaaaagtttgtgctaccagtta
ccagcgtgtgtctctgctggggtcactgttgtcatctctcccctgaggtcgctgataata
gaccaagttcagaagctgaaaactttagatattgctgcaacgtacctgactggtgatata
acagatgctgatgcttcaaaaatatacatgcagctgtccaaaaaagatcctgtaataaag
cttctgtatgttacccctgagaaggtctgtgcgagcaaccgactgctgtcagccctggaa
aacctctacaaccggaagctcctggcgcgttttgtcatcgacgaggctcactgtgtcagc
cagtggggccatgatttccgcaaagactacaaacggctgaacatgctccgcaagaagttt
cacgccgtccctatgatggctctcactgccactgctaacccaagggtgcagaaggatatt
cagaatcagcttgagatgctaaagccacaagtgtttacaatgagcttcaacaggcataac
ctgaaatatgatgtactgcccaagaagccaaagaaggtggcaatggattgcttggagtgg
atcaaaaaataccatccacatgactctgggataatttattgcctctcccgtcacgaatgt
gacacaacagcagccatgctgcagaaggaaggccttgctgcacttgcctatcatgctggc
ctcactgactccaacagagatcttgtgcagaagaagtgggttaatcaagaaggatgccag
gttatatgtgcaaccattgcctttgggatgggaatagataaacctgacgtccgctacgtc
atccatgcttcccttccaaaatctatagaaggctactatcaggagtcaggcagggctggg
cgggatggtgagatgtcccactgcctgctcttctacagctacagcgatgtcaccaggctc
aggaggctcattctgatggagaaggatggaaacagtcagacgaggcagacccacttcaac
aacctgtacagcatggtgcactactgcgagaacgtcgtcgactgccgcagaattcagctt
ctggcctactttggggagacggactttaatcctaacttctgcaaagatcacccagaagtt
atttgtgataactgcagtagaaagaaggactacaaatcaagaaatgtaacagatgaagtg
aaaagcatcataagatttgtacagcaacactgtggacaaatgggaggaataaatgggaat
agaaatacaggctctgggagatacacgttgaatatgatggtagacattttcttgggagca
aagagcgccaagatccagtctggaatatttgggaagggcgctgcctactcacggcacaac
gttgaaaggctgttcaggaagctggtcttggacaagatcctggatgaagacctgtacatc
actgctaatgaccaagctgtggcctacgtagttctaggagaaaaagcgcaggcggtgctg
aacgggttgctgcaggtggaatttcatgaaacggaaaatgccagcgccattagaaagcaa
agggcttctgtgacaaaaatgtcacagcgggaagagatggtcaaaaaatgcctgggggag
cttacagacacctgcaaaactctcggcaaaatctttgatgtccactacttcaatattttc
agtacttcaactctaaagaaaatagcagaaaccttgtcttctgatgcggaggttttgctg
cagatcgatggtgtcacagaagataaactggagaaatatggtgcagaaatcatgaaggtg
atggacaagtactctgaatggacgacgccagaagatgctgcctgcgggagtgctgatgtg
gctccggggagcgctggcacagctgggagtgaggaggaagcagaagacaacgttgtgacc
tcgagctatttcggtggcaatgcaaaccagaggaggaagaggaaaaggctgcccaacttc
gcagagtccaagaggaaaaagacgagcggcgctggcagccagcagttttattccagaggg
gccaaatgcaggcggacacgaagggcgcccggctcgagggccgcagctcctgcacacagc
tcagcagggcgtggggccaggacacagctgggcatcatggcacctcccagacccaacagc
aggcacttcctgcagccctcctacgccgtgctgcagtga
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integrated database retrieval system
