Lagopus muta (rock ptarmigan): 125698879
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Entry
125698879 CDS
T09141
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmut04121
]
125698879 (PDZRN3)
Enzymes [BR:
lmut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125698879 (PDZRN3)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125698879 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
125698879
NCBI-ProteinID:
XP_048813758
LinkDB
All DBs
Position
11:complement(16539312..16666290)
Genome browser
AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPANCQRIS
AKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLMLTHGERRSGGHSCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARSASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDIQDGSASEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTKIFTAPESQLVDVGTQTDIT
FEHIMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVD
LHRVNSQDKLGLTVCYRTDDEDDTGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNR
EEAVALLTSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTAS
MLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTSSNTLG
SQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSANP
YSLYYHTSTLDMSKSDQESVDKELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWML
HNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRR
TAEGINCQGNEGAVAYSVSQKNLFAGSESHESSTGKCHSTAKDPDTSKQMECKERKASDG
SKSPTHGQKPSGSCVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSM
CKDFSASQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggatcgcttcagcggggaagtggaccccgacttcaagtgcaacctg
tgcaacaaggttctggaggacccgctgaccaccccctgcggccacgtgttctgcgccggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgccaactgccagcgcatctcc
gccaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaaa
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggagagcac
gccgagacctgcgacttctcccccgccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgacgtggaggcgcacatgcgggagcgctgcgaggcgcggccggccgggctg
tgcgagcagggctgcggcctgatgctcacgcacggcgagcgccggagcggcggccacagc
tgcctgcgggccctgcgcgcccacggggccgctctgcaagcgcgggcggcggcgctggaa
aaggcgctgaagaaggaggcgctgcgcgccgggaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggacgccctggcccgcgcccgctccgcatcgcccggcaagggt
gaagaaactaaagcactgactctcgtccttcatcgtgactcaggctctcttggatttaat
attattggtggccgaccgtgcgtggacattcaagatggttcagccagcgaaggaattttt
gtatcaaaaatagttgacactgggcctgctgctaaggaaggagggctccaaattcatgac
aggattattgaggtcaatgggaaggatttatctaaagcaacgcatgagcaggcagtggaa
gcattcaaaacagccaaggagcccatcgtggtgcaggtgctgaggagaactccacgcacc
aagatcttcactgctcccgagtctcagctggtggatgtgggcactcagacagacatcact
tttgaacacatcatggctctaagcaagatgggctcacctaccccacccgtctcagtgctg
gacccatacctcctacccgaagatcatccatcagtgcatgaatactacgacccaaatgac
tacatgggaggaatccatcaagagatggaccgagacgagttagagttggaggaagtagat
ttgcacagagtgaacagccaggacaagcttggtctcacagtgtgttacagaacggatgac
gaggatgacactggtatttatgtgagcgagatcgatcccaacagtattgctgcaaaagat
ggtcgactccgagaaggggatcgcattattcaaatcaatggcatagaggtacagaaccga
gaagaagccgtagcacttctcaccagtgaagagagcaagaatatctccttacttgttgca
agaccagaaattcagctggatgaaggatggatggacgatgacagaaatgattttctggat
gacttgcacatggacatgttagaggagcagcaccaccaggcaatgcaatttactgccagc
atgcttcagcagaagaagcacgaggaagacggtggtaccactgacacagccactatttta
tctaaccaacacgagaaggacagtggcgtagggcgcacagatgacagcactcggaatgat
gagagctctgagcaagaaaacaatgcagatgatcacaccacttcctctaacactttaggg
agccagaagaagctgacatacagtcatgacacccttggaagtggcgatatgcagttcagc
aacgaatcgtttatctcagcagactgcacagatgtcgacttccttggcatccctgtagat
gaatgtgagcgattccgggaactgctggaactcaaatgtcaggtgaagtctgccaaccct
tacagcctttattaccataccagcactctggatatgagcaaaagcgaccaagaaagtgtt
gacaaagagctggagatgctgaatgaggagctgcgcaatattgagctagagtgcctgaac
attgtgagagctcataaaatgcagcagctgaaggatcagtaccgggagccctggatgctg
cataacagtgggttccgcaactacaacacaagcatcgatgttcgcaggcatgagctctca
gacattacagagctcccagagaagtctgacaaggatagctcgagtgcatacaacacaggt
gagagctgccgaagcacgccgctcacacttgagatttctcctgacaattccttgcgcaga
actgcagaaggcatcaactgtcaaggtaatgagggagcagtggcatatagtgtctcccaa
aagaatttatttgctggctcagaaagtcatgaatccagcactggtaaatgccattcaact
gcaaaagatcctgacactagcaaacagatggaatgcaaggagagaaaagccagtgatgga
agcaaaagcccaactcatggccaaaaaccttctggctcctgtgtctccccataccaccac
tctccatataagcatgctcatattcctgctcatgcacagcactatcagagctacatgcag
ctgatccaacagaaatcagcagtggaatacgcacagagccaaatgagtctggtgagtatg
tgcaaagacttcagtgcaagccagagtgagccgaggatggagtggaaagtgaaggtccga
agcgatggaacccgctacatcaccaagagaccagtcagggacaggttgctgagagaacga
gccataaagattaaggaagagcgcagtgggatgacgactgatgatgatgccataagtgaa
atgaagatgggccggtactggagtaaggaggagcgcaagcagcatttagtgaaagcaaag
gagcagaggaggagacgtgagtttatgatgcagagcaggctggattgtttaaaggaacaa
caaggtgcagaagaaaagaaagagatgaatatcattgaactgagccacaaaaaaatgatg
aagaaaagaaataaaaaaatatttgacaactggatgacaatccaggaactgcttacccat
ggaacaaagtcaccggacggaacacgagtgtacaattccttcctgtcagtgactactgta
taa
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