Lagopus muta (rock ptarmigan): 125699058
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Entry
125699058 CDS
T09141
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125699058 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125699058 (SF3B3)
03041 Spliceosome [BR:
lmut03041
]
125699058 (SF3B3)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125699058 (SF3B3)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125699058 (SF3B3)
Spliceosome [BR:
lmut03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125699058 (SF3B3)
Complex B
125699058 (SF3B3)
Complex C
U2 SnRNP specific factors
125699058 (SF3B3)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125699058 (SF3B3)
TFTC complex
125699058 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
125699058
NCBI-ProteinID:
XP_048814106
LinkDB
All DBs
Position
12:complement(18243794..18272157)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNGGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacctcacgttacagcgtgccacgggcatcagctatgccatccatggc
aacttctcaggaaccaaacaacaagaaattgttgtttctcggggcaagatcttggagctg
ctccgcccagaccccaacacggggaaggttcacaccttgctgacggtggaagtgtttggg
gtcatccgttccctcatggccttccggctgacaggagggaccaaagactacattgttgtg
ggcagcgactcagggcgcattgttatcctggagtaccagccttccaaaaacgtgtttgag
aagattcatcaggaaacctttggcaagagtggatgtcgcaggattgttccaggccagtac
ttggccgtagacccaaagggccgtgctgtcatgatcagtgctattgaaaagcagaagctg
gtgtatatcttaaacagagatgctgcagctcggctcaccatttcgtccccactggaagcc
cacaaggccaataccttggtctaccacgtggtgggagttgacgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattacgaggaagcagacaacgatccaacaggagaagca
gcagccaacacacaacagaccttgacgttttatgagctggacttgggtttgaaccacgta
gttaggaaatacagtgagcctctggaagagcatggcaacttccttataacagtccctggt
ggttctgatggacccagtggggtgctgatctgctcagaaaactacatcacttataaaaac
tttggtgaccagccggatatcagatgcccaattcccaggagacggaatgacttggatgac
ccagagagaggtatgatctttgtctgctctgctacacacaagaccaaatccatgttcttc
ttcctggcccaaacagagcagggagacatcttcaaaatcaccctggagactgatgaggac
atggtcactgagattcgactgaagtactttgacaccgtgcccgtagctgctgccatgtgt
gtgctgaagacaggatttctctttgtggcatctgagtttggaaaccattatctgtaccag
atagcccacctgggtgatgatgatgaggaaccagagttctcttctgccatgcctctggag
gaaggagatacattcttttttcagccacgacctctcaaaaacctggtgctggtggatgaa
ttggacagtttgtctcctattctgtgttgtcagatagcagatcttgccaatgaggacaca
ccccagctgtatgtggcctgcggtcgggggccacggtcatctctgagggttctaagacat
ggacttgaggtatctgaaatggccgtctcagagctgcccggtaaccccaatgctgtatgg
actgtgaggagacacgttgaagatgagtttgatgcctatatcatcgtgtccttcgtcaac
gccaccctggtgctgtctatcggagagactgtagaagaagtgactgactctggattcctg
ggtactacacccaccttgtcctgctctcttctgggggatgatgccttagtacaggtgtac
ccagatggcatccggcacatccgagcagataagagggtgaacgaatggaagacaccaggg
aagaaaacaattgtgaaatgtgctgtgaaccagagacaagtagtgatagcactgactgga
ggagagctggtttattttgagatggacccgtcaggacagctgaatgagtacactgaaaga
aaggagatgtcggctgatgtcgtttgcatgagtttggccaatgttccacctggggagcag
cgctcccggttccttgctgttgggctggtggacaacactgtcaggattatttccctcgac
ccttcggactgcttgcagccgctgagtatgcaggcccttcctgcacagcccgagtcgctg
tgtatcgtggagatgggcggcaccgagaagcaggacgagctgggggagaggggctccatt
ggctttctctacctgaacattggactgcagaacggtgtgctgctgcgaactgtcctggat
ccggttacgggtgatctttccgataccaggaccaggtacctgggctcacggcctgtgaag
ctcttccgagtccgaatgcaaggccaagaagcggtgctggccatgtcaagccgttcctgg
ctcagttactcctatcagtcccgtttccacctgactcccctgtcctatgagactctggag
tttgcatctggtttcgcatctgagcagtgcccagagggtattgtggccatctccacaaac
acgctgaggattttggcactggagaaattgggggcagtcttcaaccaggttgccttccca
ttgcagtacacacctcgaaaatttgtcattcaccctgagagcaacaacctgattatcatt
gagacggaccacaacgcttacactgaggccaccaaggcacagagaaagcaacagatggct
gaggaaatggtggaggctgcaggtgaagatgagagggagctggctgcagagatggctgca
gccttcctcaacgagaatctccccgaatccatctttggtgctccaaaggcagggaacggg
cagtgggcctctgtcatcagggtgatgaaccccatccagggaaatactttagatctggtc
cagctagagcagaacgaagctgccttcagcgtggctgtgtgccgcttctccaacacgggt
gaggagtggtacgtgctggtgggagttgccaaagacctgattctgaacccacgctctgtt
gctgggggctttgtctacacctacaagctggtgaatggcggtgagaagctggagtttctg
cacaagacccccgtggaggaggttcctgcagccatcgcccctttccaaggtcgagtcctc
attggagtgggaaagctcctgcgtgtgtacgacctgggcaagaagaagctgcttcggaag
tgtgagaacaagcacattgccaactacatctgtgggattcaaaccatcgggcacagagtg
atcgtttcagatgttcaggagagcttcatctgggtgcgctacaaaaggaatgagaaccag
ctcatcatctttgctgatgacacttatccccgctgggtcaccacagcaactctcctggat
tatgacactgtggccggagcagacaagtttggcaacatctgcgtggtgaggttgcctccc
aacaccaatgatgaggtagatgaggatcccaccggcaacaaagctctctgggacagaggg
cttcttaatggagcatcacagaaggctgaagtgattatgaattaccacgtgggagagaca
gtgctttcattgcagaagaccacgctgatcccgggaggctccgaatctcttgtctatacc
accttatcagggggaataggaatcttagttccttttacttcccatgaggatcacgacttc
ttccagcacgtggaaatgcacttgagatctgagcatcctcctctctgtgggcgagaccat
ctcagcttccgctcctactacttcccagtgaagaatgtgatcgatggggacctgtgtgag
cagttcaactccatggagcccaacaaacagaagaatgtggccgaagagctggaccggacc
ccacccgaggtgtccaagaagctggaagacatccgcacacgctatgctttctga
DBGET
integrated database retrieval system
