Lagopus muta (rock ptarmigan): 125699093
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Entry
125699093 CDS
T09141
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125699093 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125699093 (EDC4)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125699093 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
125699093 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
ApoLp-III
Uteroglobin
WDR55
INTS5_N
Motif
Other DBs
NCBI-GeneID:
125699093
NCBI-ProteinID:
XP_048814194
LinkDB
All DBs
Position
12:17402166..17432739
Genome browser
AA seq
1402 aa
AA seq
DB search
MASSNSIDIEDATQHLRDILKLDRPGGSVNENQRPSSSYNGDLNGLLVPDPLVAADGPSL
AKPVHRSISLGAVQEKQVICLSGDDSSTCIVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMEKDKIQEEILVNIKRPDGTPLNTSRRIIWCPFI
PDDNEENSEEGSQTLALLHEDRAEVWDLDIIRSNNRSWPVEVPNIKEGFIVVKGHSTYLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQDEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSIEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMGASVPSHGSH
EEFAFPDHIADLGTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQITVSPGSSVSSLTAVTAMSSTSVTDASMSRPSEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVTAGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPSALSAEVLEPSHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMAPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
TQRLPVKDWKAKASPRASPKLKRKGKKDDGDVNQSPRSSNNQVTPEFQEELMCVLRSQQR
ELSELRQNQMELLQRLTNHLDAIQSSLMGHMERVIDSQQEQEQRRLDRALTEGQQRNGQL
QEHLSQQLSQTLSNAVCNRLERTVREEMKKTVPQCISKSVDPVAGQLSNTIATKLTAIEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYVQQLETHMKNKKAREQEARDPLLNQLRQLISTFQSTTEQLASTIAANIHAE
VQHQLHIIVGNLQESILTQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHL
DFQSQQTHIIQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQQPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMSQVRQKLFQFLQVEPHN
TLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctccaacagcatcgacatcgaggacgccacgcagcacctgcgggatatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagaccgtcaagttcctataac
ggagacctgaatgggctgctggtgcccgatcccctggtggctgcagatggaccttcgctg
gccaaaccggtgcaccgcagcatttctctgggagctgtgcaggagaagcaagtcatctgc
ctttctggtgatgacagctccacttgcatagttatatcagcaaaggatgtggaaatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagcaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaagtactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctccgctatggtgcgagtg
ttgagcgtcagcactgcggagcggaccttgctgaagggattcacaggtggtgtggcagac
ctggcttttgctcatctcaactccaaccagctggcgtgcctggatgaggctggcaacctc
tttgtctggcgcctggccatggagaaagacaaaatccaagaggagatcttggtgaacatc
aaacggcctgacggtacccctctgaacacctctcgaagaatcatctggtgtcctttcatc
ccagatgataatgaagagaacagtgaagagggaagtcaaacgttggcattgctgcatgag
gacagggcagaggtctgggatttggacattatccgctcaaacaacagatcctggccagtg
gaagtgcctaacatcaaagaaggcttcattgtagtgaaaggccacagcacgtacctgagt
gagggagcactttctccggatggaactgtattggccacagcaagtcatgatggttttgtc
aaattttggcagatctatattgaggggcaagatgagccaagatgtcttcatgagtggaaa
ccacatgatgggaggcctctttcctgcctgctcttctgtgacaaccacaaaaaacaagat
ccagaggttcccttctggaggtttctcatcacaggagcagatcagaacagagaactgaag
atgtggtgcactgtgtcttggacctgcctgcagaccgtccgattttctcctgacatcttc
agctccatgagtattcttcccagcctgaaagtctgcctggatctctccgctgagtatctg
atactgagcgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaagat
gagggcaaagcttatttcagttccatctcagagtttctcctcacccatccagtcctaagc
tttggcatccaggcagtgagccgctgccggttaaggcacactgaagtgcttccagcagaa
gaggaaaatgacaacttgagtatagaaggtgctcagggagcaggggctgttgagtcagca
gctggcgtgctgataaaactcttctgtgtgcacaccaaagcactacaagatgtgcagatt
agattccagcctctccatagtcctgacatgggtgcatctgtgccttcccatggctctcat
gaagaatttgcctttccagatcacatagctgatctaggcacagaagggctgggatctgaa
aagggatctgtgcacggctctcaacccgacttgcgccgtatcgcggatctgcctgtacca
gcagacttcctttcactctcaaatgatgccaagcctaagctgatgactccagatgcattc
atgacaccgagtacatctcttcagcagatcactgtatctccgggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctatgtccaggcca
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacactgagcagc
agtagcagcagcctgcaaactagtcctaggagccattctgttcttatcccaggccttcct
gacaagctgacaccaaaggcacctgttccagtcacagcagggaactcctctctagcgctg
gagctgcaggaagtggagcccttggtggtgcctcaggcttctcccacccgtgagcgttcg
ccggacgtcatttcctctgcttccacagccatgtcccaggacatccctgagattgcttct
gagaccttgcagcgtagctttgcagctgctccatctgcactctctgcagaagtgctggag
cccagtcatcacgcagacagtatggcctctgcagcctcagccttgcatttgctgtctccg
aggaaccggcacaattcagagcacagccaccactctttggacatggctccggtggaggtg
gacagactgaatgctccgtccttactggagactgctttaactcaggaaaatgcatcttcg
gacagtgttgtgagtcagccatggccagcagctcctgacataaccagagaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctatcat
cgacacagctaccaccttctgcagcacgacagccaggatgctagtgcagaacaaagtgac
catgatgatgaagttgcaagtttggcttctacatcaggtggatttggtgccaaagcatct
acgcagaggctgcctgtgaaggattggaaagccaaggcatcccctcgggcttccccaaag
ctaaagcggaagggcaagaaagatgacggggatgtgaaccagtcgccaagatcatctaac
aaccaggtgacaccggagttccaggaagagctgatgtgtgtgttgaggagccaacagcgt
gagctctctgagctgcgtcagaaccagatggagctgttgcagaggctcacaaatcacctt
gatgccattcagagctcgctgatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggatcgagcactgacagaagggcagcagcgcaacgggcagctc
caggagcatctctctcagcagctctctcagaccctttccaatgctgtgtgcaaccgtctg
gagaggactgttcgtgaggagatgaagaagacagtaccccagtgcatttccaagagtgtg
gacccagttgctggccagctaagtaacactattgccaccaagctcactgctattgagggg
acactgaaagagaacattaccaagctagtgaaatcaaagaaccttacagacagcgttgtg
agggcaacagctgacaccctgcagggcccaatccagtcggcctacagggaagccttccag
agcgtcgtgttgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacgcaggaatatgttcagcagctcgagactcacatgaagaacaag
aaggcacgagaacaggaggcccgggacccactgctgaatcagctccgacagctcatcagc
accttccagagcaccaccgagcagctggcttccaccatcgcagccaatatccatgctgag
gtgcagcaccagctgcacattattgtgggcaacctgcaggagtcgattttgactcaggta
cagagagtcattaaaggagaagtgagtctggcaatgaaggagcagcaagcagctgtcacc
tcgagcattgttcaggcaatgcgttcggctgcagggactcccatcccctccactcacctg
gacttccagtctcagcaaactcacatcattcagctgctccagcagggccatctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctgtatgtctgtgagact
gtggacacgcagcaagtgtttggccagcagccgtgcccgctgtcccagcctgtgctgctc
tcactcattcagcagctctcctcggatttgggtactcgtacagaactgaagctgaattac
ctggaggaggccgtgatgcacctggaccacagtgaccccatcacccgggaccatatgggg
tcagtcatgagccaggtgcggcagaagcttttccagttcctccaggtggaacctcacaac
acgctgagcaagcctgcacgccgcctgatgatcatgctgcagggcctggtcactcctggc
atgacctaa
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integrated database retrieval system
