Lagopus muta (rock ptarmigan): 125699171
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Entry
125699171 CDS
T09141
Symbol
KATNB1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lmut04812
]
125699171 (KATNB1)
Cytoskeleton proteins [BR:
lmut04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
125699171 (KATNB1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
eIF2A
PROPPIN
Beta-prop_IP5PC_F
RMC1_N
WDR54
Beta-prop_LRRK2
VPS8_N
Beta-prop_WDR11_1st
Beta-prop_VPS8
WD_LRWD1
Ge1_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125699171
NCBI-ProteinID:
XP_048814393
LinkDB
All DBs
Position
12:complement(16992485..17009609)
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AA seq
658 aa
AA seq
DB search
MAAAVVTKTAWKLQEIVAHSSNVSSLVLGKKSGRLLATGGDDCRVNVWSVNKPNCVMSLS
GHTTPIESLQISAKEELLVAGSQSGSIRVWDLEAAKILRTLLGHKANICSLDFHPYGSFV
ASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK
VMFEFTGHSGPVSVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCVLFN
PDGCCLYGGYQDSLRVYGWEPERCFDVVLVNWGKVADLAICNNQLIGVSCAQSTVSSFVV
DLSRVTKSGSVPHGLLRNDEPLSQPTPTGSSLRRSYDRPSTSCSKPQSRVKHSSESERRS
PSSEEERDEKESKAEIQNPEDYKEIFQPKNAISRTPPRMNEPFPAPPEDEPVTAKEAAKP
DQPVEVQTPLPKQELPEPIHRPPIASSTPLPRAEPSVIPAARNEPIGLKASDFLPALKNQ
SQTELVDEEIMSQIRKGHKTVCMVLTSRHKNLDTVRAVWSTSDFKSSVDSAVATNDLSVV
VDLLNIVNQTASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDIL
AAPPSVGVDITREERLHKCRLCYEQLKNISNIVKNKSGLSGRHGSAFRELHLLMAALE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggccgtcgtcaccaagacggcctggaagctgcaagagatcgtggctcacagc
agcaacgtgtcctcattggtgctggggaagaaatcgggccggctgctggcgaccggagga
gatgactgtcgggtcaacgtgtggtcagttaacaagcccaactgtgtcatgagcttgtca
ggccacacaacacccattgagagcctacagatcagtgccaaggaggaacttcttgttgca
gggtcccagtcagggtccattcgagtctgggacctggaagctgccaaaattcttcgtaca
ctacttggtcacaaagcaaacatctgcagccttgacttccatccttatggcagtttcgtg
gcatctggctctctggatacagacattaagctgtgggatgttcgaagaaaaggctgcatc
ttcaagtataagagtcacacacaagcagtgagatgcctccgatttagtcctgatggcaag
tggttagcctctgctgctgatgatcacactgtcaagctgtgggatctgactgctggaaag
gtaatgttcgagttcacaggacattctggcccagtcagtgttgttgaattccatcccagt
gaataccttttggcttctggcagctctgacaggaccattcgtttctgggacttggagaag
tttcatgttgtgagctgtattgaagaggaggctactcctgtcaggtgtgttcttttcaac
ccagatggctgctgtttgtatggtggctaccaggattctctgcgtgtatacggctgggag
ccagagcgctgctttgatgtggtcttagtgaactggggaaaagtggctgacctagctatc
tgcaacaaccagctgataggagtttcctgtgcacagagcacagtctcttcctttgttgtg
gatctcagcagagtcacaaaatcaggttcagttcctcatgggctgctcaggaacgacgag
cctctgtctcagcccacccccacagggtcctcccttcgtcgcagctatgacagaccctca
actagctgcagcaagcctcagagcagagtgaagcacagttcagagagcgagagacgcagt
cccagcagtgaagaggagcgggatgagaaggaatccaaagctgagatccagaacccagag
gattacaaagagatcttccagcccaagaatgccatctctcgaactcctcctcgaatgaat
gaaccctttccagcccccccagaggatgagcctgttactgcaaaggaagcagcaaagcct
gaccaacctgtggaagtccagaccccgttgccaaagcaagagcttcctgagccaattcat
aggccaccaattgcttcatcaactcctctgcccagggcagagccatcagttattcctgca
gccaggaacgagcccattggcctgaaagcctctgacttcctaccagctctgaaaaaccaa
agccagactgagctcgtagatgaagaaatcatgtcccagatcaggaaaggccacaagact
gtgtgcatggtgctcaccagccgtcacaagaatctggacactgtgcgggctgtatggagc
accagtgacttcaagagctctgtggactctgctgtagcaaccaacgacctgtctgttgtt
gtggacctcttgaacattgtcaaccagacagcgtctctctggaagttggatttatgcact
gtcgttctgcctcagatagaaaaacttctccaaagtaaatatgaaagttatgtgcaaacg
ggctgcacctccttgaaactcattctgcagagattcctgccgctgatcaccgacatactt
gctgcaccaccttctgtaggagtggacatcaccagagaggagaggctccataaatgcagg
ctgtgctatgagcagctgaagaacatcagcaacattgtaaagaacaagtccgggctcagc
ggccgccatggcagtgccttcagagaactgcatctcctcatggctgcgctggagtga
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