Lagopus muta (rock ptarmigan): 125699376
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Entry
125699376 CDS
T09141
Symbol
UTP4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125699376 (UTP4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lmut03009
]
125699376 (UTP4)
Ribosome biogenesis [BR:
lmut03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125699376 (UTP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_Vps41
EIF3I
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Ge1_WD40
DUF7165
Beta-prop_SPT8
DUF5581_N
VID27
Motif
Other DBs
NCBI-GeneID:
125699376
NCBI-ProteinID:
XP_048814837
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Position
12:complement(1026596..1031438)
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AA seq
687 aa
AA seq
DB search
MGEFEVHRVRFFELVPAGVRCMAYRHRGCRLALARTDGAVEVYNFAANYYMEKAIPGHQA
RSVEALCWAAGERLFGAGLSGDITEYDLERLHPARAVDGFGGPIWSMAANNDGTRLAIGC
EDGSVKLFQVVPGGVQFEKNLDRQKGRVLCLSWHPSGTHLAAGSINFIRVLDVRSGRTAQ
RIMVNYHMPKSKKRECVVWSIAFLSSGTVVSSDSFGRVQFWDWERGTLQDSHTVSTSAAL
SLAVSEEEDSIVVGTSAGATYQFQLLPVKAGGQEKRWVKTKPFQHHTHDVRAVVHTPTAL
ISGGLDAQLVIRPLMEKVQKKGYDTALRKFTLPHRRIVSCARKARLLLFQFSQHLELWRL
GSTNKTGKDGEVLPVSRMPEHLLQLNSKGPEHICCSCVSPCGSWIAYSTASRFHLYRVQH
EGDSISVKKVPGVPKLLLPAYQLQCASDSGRLFIASDRGSVHVVQLLELGGCKHLHTLRP
PAGTREAVYLLAVSADGNWLAAVSGDWEVHVYSLKHFKHHCTVPTYSCAVTALAIHPATN
NLFISYSDQQLFEFSIPEKQYTAWSRAVQNSGLHRLWLERDSPITHIAFNPKNTSQVLLH
DVYMLCVLDKSLPLPDNNALLMNQSTLKQLSEPARRRQLHAFKICKKFQPLLFADLLDER
CLVTVERPAVDINAELPPPVQQKKFGT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttgaggtgcaccgcgtccggttcttcgagctggtgcccgccggcgtgcgc
tgcatggcctaccggcaccgcggctgccgcctggcgctcgcccgcaccgacggcgccgtc
gaggtgtacaacttcgccgctaattactacatggagaaggccatccccgggcaccaggca
cgctcagtggaagcgctgtgctgggcagcaggggagcggctctttggggccggcctgagt
ggggacatcactgagtatgacctggagcggctgcacccggcccgcgctgtcgatggcttc
gggggacccatctggagcatggctgccaacaacgatggcacacggctggcgattggctgt
gaggacggctcggtgaagctcttccaggtggtgcctggtggtgttcagtttgagaagaac
ctggaccggcagaaaggacgtgtgctgtgcctctcctggcatccctcggggacccacctg
gcagctggctccatcaacttcatccgtgtgcttgatgtccgctcaggccgaacagcccag
aggatcatggtgaactatcatatgccaaagtccaagaagcgcgagtgcgtcgtgtggagc
atcgccttcctgtcgagtggcaccgtcgtcagctcagattcatttgggagagtgcagttt
tgggactgggagcgagggactctgcaggactcccacactgtcagcacctcagctgcactc
tcgctggctgtgtcagaggaagaggacagcattgtggtgggcacctcggcgggggccact
taccagttccagctgctgccagtgaaggcaggcggccaggagaagcgctgggtgaagacg
aagccattccaacatcacacccacgacgtgcgagctgtggtgcacaccccgacagctctc
atctctggaggcctggatgcccagctggtgatccgcccgctcatggagaaggtacagaag
aagggctacgacacagcgctgaggaaattcacccttccccatcgacgcattgtctcctgt
gccaggaaagcccggctcctcctcttccagttctcccagcacctggagctctggagactt
ggctctactaataaaactggaaaggatggagaggtccttcccgtgagccgcatgccggag
cacctcctgcagctcaatagcaagggtcctgagcacatctgctgcagctgcgtctcaccc
tgtggcagctggattgcctacagcactgcgtctcgcttccacctctaccgtgtgcagcat
gagggtgacagcatcagcgtcaagaaggtccctggcgtgcccaagctgctgctcccggcc
taccagctgcagtgtgcttccgactcaggcagactcttcatcgcctctgacagaggctct
gtccatgtggtgcagctgttggaactgggaggctgcaaacacctgcacacgctgcgccca
cccgcagggacccgggaagctgtctacctgctggcagtgagtgctgatgggaactggctg
gctgcggtcagcggggactgggaggtgcatgtctacagcctgaaacacttcaagcaccac
tgcacggtgcccacctacagctgcgcggtgacagccctcgccatccacccagcaaccaac
aacctttttatctcctactcggaccagcagctctttgagttcagcatccctgagaagcag
tacacggcctggagccgcgcggtgcagaacagcgggctgcacaggctctggctggagagg
gactcgcccatcacccacatcgccttcaacccgaagaacacctcgcaggtcctgctgcac
gatgtctacatgctgtgtgtccttgacaagtccctgcccctgcccgacaacaacgccctg
ctgatgaaccagagcaccctgaagcagctctcggagcccgcccggcgccggcagcttcac
gccttcaagatctgcaagaagttccagccgctgctgtttgcggaccttctggacgagcgc
tgcctggtgacggtggagcggcccgccgtggacatcaacgcggagcttccgccgcccgtg
cagcagaagaagttcggcacttag
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