Lagopus muta (rock ptarmigan): 125699553
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Entry
125699553 CDS
T09141
Symbol
PCDH19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K28837
protocadherin-19, delta 2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
125699553 (PCDH19)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125699553 (PCDH19)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Protocadherins
125699553 (PCDH19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Ig_Cad99C_N
Cadherin_FAT4_N
PepSY
Ig_BT4661_3rd
Motif
Other DBs
NCBI-GeneID:
125699553
NCBI-ProteinID:
XP_048815147
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All DBs
Position
13:5188375..5240315
Genome browser
AA seq
1087 aa
AA seq
DB search
MGALPALLGAALLWAGAGALVNLKYSVEEEQRAGTVIANVAKDARDAGFVIDPRQPTAFR
VVSNSAPHLVDINPGSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKLEIKDL
NDNAPSFPTDQIELEISETASPGTRVPLESAYDPDSGSFGVQSYQITPNDLFGLETKTRG
DGSRFAELVVEKSLDRETQSHYSYVITALDGGDPPNFGTVELSIRVIDSNDNNPLFEEPA
YTVSVPENAPPGTPVIRLNASDPDEGTNGQVLYSFHSYVSDRARELFQIDPQSGLITVSG
AIDYEEGHVYELDVQAKDLGPNSIPAHCKVTISVQDANDNPPLINLLSVNSELVEVSENA
PPGYVIALVRVSDRDSGANGRVQCKLLGNVPFRLQEYESFSTILVDGRLDREQRDQYNLT
IQAKDNGVPSLQATKSFTVKITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDL
GLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGNPS
LQSNATVRVIVLDVNDNTPVITAPPLVNGTAEVYIPRNAGVGYLVTVVKADDYDEGENGR
LSYEMVEGDRGFFEIDQVNGEIRTTRAFGENAKTAYELIVVAHDHGKTSLSASALILIYL
SPALDAQESIGSVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCRIAEYSY
GHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSD
STFLNVESQNSRNAGSNHIYHHTFTGQSPQQPDLIINGMPLPETENYSFDSNYVNSRAHL
IKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGLYCDTAVNDVLNTSVPSMGSQGPEP
DQSEGFHCREECRILGHSDRCWMPRSAVPSRAKSPEHGRNVIALSIEATAVDAEPYADCS
AKRTFATFGKEGGEPPAEERPANPKGKRTVEPAAGSPKVSGTVREAGNGCEAASPVTSPL
HLKGPAAYGGLPCPAGRPPANTGPARPAEAEPRGADSEGSLQEGNPLLQDRREKDSPAGR
RLRDIVL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgggggctctcccggcgctgctgggggccgccttgctttgggccggcgccggcgccctc
gtcaacctcaagtactcggtggaggaggagcagcgggccggcaccgttatcgccaacgtc
gccaaggacgcgcgggacgccggcttcgtgatagacccccggcagcccaccgccttccga
gtggtctccaactcggccccccacctggtggacatcaaccccggatctgggctgctggtc
accaagcagaagatcgaccgggacctgctgtgccggcagagccccaagtgcatcatctcg
ctggaggtgatgtccagctccatggagatctgcgtgatcaagctggagatcaaggacctc
aacgacaacgcgcccagcttccccactgaccagatcgagctggagatctcagagaccgcc
agccccggcacccgtgtcccactggaaagtgcctatgacccagactcgggcagctttgga
gtgcagagctatcagatcacccccaatgacctctttgggctggagaccaagacacgggga
gatggctctcgctttgctgagctggtggtggagaagagcctggaccgtgagacccagtcc
cactacagttacgtgatcacggcgctggatggcggagacccgcccaactttggcacagtg
gagctgagcatccgcgtcatcgactccaatgacaacaaccctctcttcgaggagccggcc
tatactgtcagcgtgcctgaaaatgccccaccaggcacaccagtcatccgcctcaacgcc
tctgacccggatgagggcaccaatgggcaggtgctctactctttccacagttatgtttct
gaccgggctcgagagctcttccagattgaccctcagagcggcctcatcacagtcagtggt
gccatcgactatgaggagggacatgtatacgagctggatgtgcaggccaaggacttggga
cctaactccatccctgcccactgcaaagtgaccatcagcgtgcaggacgccaatgacaat
cctcccctcatcaatcttctctccgtcaacagtgagctggtggaggtgagcgagaacgcc
cctccagggtacgtcatcgccttggtgcgggtctcggaccgcgactcgggggccaacgga
cgtgtgcagtgcaagctgctgggtaacgtacccttccggctgcaggagtacgagagtttc
tccaccatcctggtggatgggcggctggaccgtgagcaaagggaccagtacaacctcacc
atccaggccaaggacaatggcgtcccctccttgcaggctaccaagtccttcactgtcaag
atcactgatgagaatgacaaccaccctcacttttccaagccctactaccaggtcattgtg
caggagaacaacaccccgggggcctacctcctctcggtctcagcaagggaccctgacctg
ggcctcaatggcagcgtctcctaccagatcgtgccctcccaagtcagggacatgcctgtc
ttcacctatgtctccatcaaccccaactctggagatatctatgctttgaggtccttcaat
catgaacagaccaaggcctttgagttcaaagtcttggcgaaagatgggggcaatccctct
ctgcagagcaatgccactgtcagggtgatcgtcctggacgtcaacgacaacaccccggtg
atcactgccccaccgttggtcaatgggaccgcggaggtttacatcccccggaatgcaggg
gttggctacctggtgacagtggtcaaagcagatgactatgatgagggtgaaaatggcagg
ctttcctatgaaatggtggaaggagacagaggattttttgagatagaccaggtcaatgga
gagataaggaccaccagagcctttggggagaatgccaagacagcctacgagctgatcgtg
gtggctcacgaccatggaaaaacgtccctgtcggcctctgccttgattttgatatacttg
tccccagccctggatgcccaggagtccataggatctgttaacctctccctgattttcatt
attgccctggggtctattgcagccattctttttgtcaccatgatcttcgtggccgtaaag
tgcaaaagggataacaaggaaatcaggacctataactgcagaattgccgagtactcctac
gggcatcagaagaaatcaagcaagaagaagaaaatcagcaagaacgatatccgcctggtt
ccgcgcgacgtggaggagacggataaaatgaacgttgtgagctgctcctccctcacctcg
tctctcaactacttcgactaccaccagcagactctgccgctgggctgccgccgctccgac
agcaccttcctcaatgtggagagccagaacagccgcaacgccggctccaaccacatctac
caccacaccttcacggggcagagcccccagcagcccgacctcatcatcaacgggatgcca
ctgcccgagactgaaaattactcctttgactccaactacgtgaacagcagagctcattta
ataaaaagcagctccacgttcaaagacctggagggaaacagcctgaaggacagcggccat
gaggagagtgaccagactgacagtgagcacgacgtgcagcgcggcctctactgcgacacg
gctgtcaacgacgtgctcaacaccagcgtgccctccatgggttcgcagggccccgaacca
gatcagagcgaaggatttcattgcagggaagaatgccgcatcctgggccactcggaccgg
tgctggatgccccgcagcgccgtccccagccgcgccaagtcccccgagcacggcaggaac
gtcattgccctctccatagaagcgacggcggtggacgcggagccttacgcagactgtagt
gccaaaaggaccttcgccactttcggcaaggagggcggcgagccgccagccgaagaacgg
cccgccaaccccaaaggcaaaagaacggtggagccggccgccggcagccccaaggtgagc
ggcaccgtgcgcgaggcgggcaatggctgcgaggccgccagccccgtcacctcgcccctg
cacctgaagggccccgcggcctacggcggcctgccctgccccgccggccggcccccggcg
aacactggccctgcgcggcccgcggaggccgagcccaggggggcggacagcgagggcagc
ctgcaggagggcaacccgctgctgcaggaccgcagggagaaggactcgccggcgggcagg
agactgagggacatcgtcctctga
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