KEGG   Lagopus muta (rock ptarmigan): 125699553
Entry
125699553         CDS       T09141                                 
Symbol
PCDH19
Name
(RefSeq) protocadherin-19 isoform X1
  KO
K28837  protocadherin-19, delta 2
Organism
lmut  Lagopus muta (rock ptarmigan)
Pathway
lmut04519  Cadherin signaling
Brite
KEGG Orthology (KO) [BR:lmut00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04519 Cadherin signaling
    125699553 (PCDH19)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:lmut04515]
    125699553 (PCDH19)
Cell adhesion molecules [BR:lmut04515]
 Cadherins
  Protocadherins
   125699553 (PCDH19)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Ig_CLSTN Ig_Cad99C_N Cadherin_FAT4_N PepSY Ig_BT4661_3rd
Other DBs
NCBI-GeneID: 125699553
NCBI-ProteinID: XP_048815147
LinkDB
Position
13:5188375..5240315
AA seq 1087 aa
MGALPALLGAALLWAGAGALVNLKYSVEEEQRAGTVIANVAKDARDAGFVIDPRQPTAFR
VVSNSAPHLVDINPGSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKLEIKDL
NDNAPSFPTDQIELEISETASPGTRVPLESAYDPDSGSFGVQSYQITPNDLFGLETKTRG
DGSRFAELVVEKSLDRETQSHYSYVITALDGGDPPNFGTVELSIRVIDSNDNNPLFEEPA
YTVSVPENAPPGTPVIRLNASDPDEGTNGQVLYSFHSYVSDRARELFQIDPQSGLITVSG
AIDYEEGHVYELDVQAKDLGPNSIPAHCKVTISVQDANDNPPLINLLSVNSELVEVSENA
PPGYVIALVRVSDRDSGANGRVQCKLLGNVPFRLQEYESFSTILVDGRLDREQRDQYNLT
IQAKDNGVPSLQATKSFTVKITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDL
GLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGNPS
LQSNATVRVIVLDVNDNTPVITAPPLVNGTAEVYIPRNAGVGYLVTVVKADDYDEGENGR
LSYEMVEGDRGFFEIDQVNGEIRTTRAFGENAKTAYELIVVAHDHGKTSLSASALILIYL
SPALDAQESIGSVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCRIAEYSY
GHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSD
STFLNVESQNSRNAGSNHIYHHTFTGQSPQQPDLIINGMPLPETENYSFDSNYVNSRAHL
IKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGLYCDTAVNDVLNTSVPSMGSQGPEP
DQSEGFHCREECRILGHSDRCWMPRSAVPSRAKSPEHGRNVIALSIEATAVDAEPYADCS
AKRTFATFGKEGGEPPAEERPANPKGKRTVEPAAGSPKVSGTVREAGNGCEAASPVTSPL
HLKGPAAYGGLPCPAGRPPANTGPARPAEAEPRGADSEGSLQEGNPLLQDRREKDSPAGR
RLRDIVL
NT seq 3264 nt   +upstreamnt  +downstreamnt
atgggggctctcccggcgctgctgggggccgccttgctttgggccggcgccggcgccctc
gtcaacctcaagtactcggtggaggaggagcagcgggccggcaccgttatcgccaacgtc
gccaaggacgcgcgggacgccggcttcgtgatagacccccggcagcccaccgccttccga
gtggtctccaactcggccccccacctggtggacatcaaccccggatctgggctgctggtc
accaagcagaagatcgaccgggacctgctgtgccggcagagccccaagtgcatcatctcg
ctggaggtgatgtccagctccatggagatctgcgtgatcaagctggagatcaaggacctc
aacgacaacgcgcccagcttccccactgaccagatcgagctggagatctcagagaccgcc
agccccggcacccgtgtcccactggaaagtgcctatgacccagactcgggcagctttgga
gtgcagagctatcagatcacccccaatgacctctttgggctggagaccaagacacgggga
gatggctctcgctttgctgagctggtggtggagaagagcctggaccgtgagacccagtcc
cactacagttacgtgatcacggcgctggatggcggagacccgcccaactttggcacagtg
gagctgagcatccgcgtcatcgactccaatgacaacaaccctctcttcgaggagccggcc
tatactgtcagcgtgcctgaaaatgccccaccaggcacaccagtcatccgcctcaacgcc
tctgacccggatgagggcaccaatgggcaggtgctctactctttccacagttatgtttct
gaccgggctcgagagctcttccagattgaccctcagagcggcctcatcacagtcagtggt
gccatcgactatgaggagggacatgtatacgagctggatgtgcaggccaaggacttggga
cctaactccatccctgcccactgcaaagtgaccatcagcgtgcaggacgccaatgacaat
cctcccctcatcaatcttctctccgtcaacagtgagctggtggaggtgagcgagaacgcc
cctccagggtacgtcatcgccttggtgcgggtctcggaccgcgactcgggggccaacgga
cgtgtgcagtgcaagctgctgggtaacgtacccttccggctgcaggagtacgagagtttc
tccaccatcctggtggatgggcggctggaccgtgagcaaagggaccagtacaacctcacc
atccaggccaaggacaatggcgtcccctccttgcaggctaccaagtccttcactgtcaag
atcactgatgagaatgacaaccaccctcacttttccaagccctactaccaggtcattgtg
caggagaacaacaccccgggggcctacctcctctcggtctcagcaagggaccctgacctg
ggcctcaatggcagcgtctcctaccagatcgtgccctcccaagtcagggacatgcctgtc
ttcacctatgtctccatcaaccccaactctggagatatctatgctttgaggtccttcaat
catgaacagaccaaggcctttgagttcaaagtcttggcgaaagatgggggcaatccctct
ctgcagagcaatgccactgtcagggtgatcgtcctggacgtcaacgacaacaccccggtg
atcactgccccaccgttggtcaatgggaccgcggaggtttacatcccccggaatgcaggg
gttggctacctggtgacagtggtcaaagcagatgactatgatgagggtgaaaatggcagg
ctttcctatgaaatggtggaaggagacagaggattttttgagatagaccaggtcaatgga
gagataaggaccaccagagcctttggggagaatgccaagacagcctacgagctgatcgtg
gtggctcacgaccatggaaaaacgtccctgtcggcctctgccttgattttgatatacttg
tccccagccctggatgcccaggagtccataggatctgttaacctctccctgattttcatt
attgccctggggtctattgcagccattctttttgtcaccatgatcttcgtggccgtaaag
tgcaaaagggataacaaggaaatcaggacctataactgcagaattgccgagtactcctac
gggcatcagaagaaatcaagcaagaagaagaaaatcagcaagaacgatatccgcctggtt
ccgcgcgacgtggaggagacggataaaatgaacgttgtgagctgctcctccctcacctcg
tctctcaactacttcgactaccaccagcagactctgccgctgggctgccgccgctccgac
agcaccttcctcaatgtggagagccagaacagccgcaacgccggctccaaccacatctac
caccacaccttcacggggcagagcccccagcagcccgacctcatcatcaacgggatgcca
ctgcccgagactgaaaattactcctttgactccaactacgtgaacagcagagctcattta
ataaaaagcagctccacgttcaaagacctggagggaaacagcctgaaggacagcggccat
gaggagagtgaccagactgacagtgagcacgacgtgcagcgcggcctctactgcgacacg
gctgtcaacgacgtgctcaacaccagcgtgccctccatgggttcgcagggccccgaacca
gatcagagcgaaggatttcattgcagggaagaatgccgcatcctgggccactcggaccgg
tgctggatgccccgcagcgccgtccccagccgcgccaagtcccccgagcacggcaggaac
gtcattgccctctccatagaagcgacggcggtggacgcggagccttacgcagactgtagt
gccaaaaggaccttcgccactttcggcaaggagggcggcgagccgccagccgaagaacgg
cccgccaaccccaaaggcaaaagaacggtggagccggccgccggcagccccaaggtgagc
ggcaccgtgcgcgaggcgggcaatggctgcgaggccgccagccccgtcacctcgcccctg
cacctgaagggccccgcggcctacggcggcctgccctgccccgccggccggcccccggcg
aacactggccctgcgcggcccgcggaggccgagcccaggggggcggacagcgagggcagc
ctgcaggagggcaacccgctgctgcaggaccgcagggagaaggactcgccggcgggcagg
agactgagggacatcgtcctctga

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