Lagopus muta (rock ptarmigan): 125699648
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Entry
125699648 CDS
T09141
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125699648 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
125699648 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125699648 (THOC2)
03041 Spliceosome [BR:
lmut03041
]
125699648 (THOC2)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125699648 (THOC2)
Spliceosome [BR:
lmut03041
]
Complex C
Other components
EJC/TREX
125699648 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125699648 (THOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
125699648
NCBI-ProteinID:
XP_048815342
LinkDB
All DBs
Position
13:15448879..15500472
Genome browser
AA seq
1607 aa
AA seq
DB search
MAIVLPAEWIKNWEKGGRNEFLQLCRALSEDKSHDSLTFRDIQQALYELSSHVVRGNLKH
EQASGVLADIIEFREDMPSILADAFCILDIETSCLEEKTKRDCFTQLVLSCLYLVSDTVL
KERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDL
SGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQT
LCHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREI
VEAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWQHAQS
IMDQMPPFYATSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISPLPNKRAPKQADS
FEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEAGATKKFINDRMVKFQSDGSK
QEDKEKMEVLFSCVLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKN
ETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHANPTILFDYILSQIQK
YDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
FRKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQL
KAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKL
YDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHQISSK
YDELKKAEKGNKQQHKVHKYITACELVMAPVHEAVISLHPPKVWDDISPQFYATFWSLTM
YDLAVPHSSYDREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHV
QRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTP
NFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPG
FLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTK
ILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHK
DPPARNAVAATVQNGPGGAGMPTSLTINTAKLEESAAEETDKLKEKSQGTVKVINKTVNA
TPKVTTSNGNSASNSKIIKEKDDKEKSGKEKDKEKKEKIPATTPEAKALGKDGKDKPKEE
RANKDEKPREIKEKTPKSDKEKEKAKKEEKASKEEKSKTIVTTIESKSVTEKEREKEPSR
EKDVAKDMKSKENTKGGEKIPVAGSLKSPVPRSETSECEREQKRRKVDIHSSPSHSSTVK
DNLNELKDSSTKHYINHTTPTLSKSKEREVDKKDLDKSRERSREREKKEEKDRKDRKRDH
SNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSPRSNEKEREKSKSKSSGKEKGDSI
KAEKMEKSSSGSKKESRHDKEKEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgtgctccccgccgagtggataaagaactgggaaaaggggggcaggaacgag
tttttgcaactgtgtcgcgctctcagtgaagacaaaagccatgacagcctcactttcaga
gatatccagcaggctttgtatgagctttcatctcatgttgtgagaggaaacttaaagcat
gaacaagcttctggtgttcttgctgatattatagagtttcgtgaggacatgccttccatc
ttagctgatgcattctgcatattagatattgaaacaagttgcttagaagaaaaaactaaa
agggattgttttactcagctggtgttatcatgcttgtatcttgtatctgacactgtccta
aaggagcgattagatccagaaacactggaatcattaggacttatcaagcagtctcaacag
ttcaaccagaaatctgttaaaataaagacaaaactattctacaagcaacagaaattcaat
ttattacgagaggagaacgaaggttatgcaaagctgattgcagaactggggcaagaccta
tctggaaacatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttt
aaccttgatcctaacagagttttggatattatcctagaagtctatgagtgcaggcctgag
tatgatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaact
ctatgccatatccttgggttcaaattcaaattttatcaggatcccagtggtgagacacct
tcctccctgtacagagttgctgctgtcctgttgcaacataatctcatagatttggaagat
ctttatgttcatcttcttccaggggataatgccatcattgaagagcacaagcgagagata
gtggaagctaagcagattgtgagaaaactcaccatggttgtcttatcctctgagaaaact
gaggaaaaggagaaggaaaaagaaaaagaggaggagaaaaccgagaagcctccagataat
cagaagcttggtttattggaagctttattaaaaattggtgattggcagcacgcacagagt
attatggatcagatgcctccattttatgctacttcacataagcccattgcgattgccctt
tgccagcttgtacacgtgacaattgaacctttgtaccgcagggttggtgtaccaaaaggg
gctaaagggtcaccaatttctcctctgccaaacaagagagcaccgaaacaagcagacagc
tttgaagacttgaggaaggaagtgttcaacatgctgtgttaccttggtcctcatctctcc
cacgatcccattttatttgcgaaagtggtgcgccttggaaaagcttttatgaaagaggct
ggagctacgaagaaattcatcaatgacagaatggttaagtttcagtctgatggaagcaag
caagaagacaaggagaaaatggaggtactgttcagctgcgtgttgagcattaccgatcag
gttctgcttccttctctttctttgatggactgcaatgcgtgcatgtctgaagaactgtgg
ggaatgttcaaaacatttccataccagtaccggtaccgtctttatggacagtggaagaac
gaaacatacaatagccatccactcctagtgaaagttaaggctcaaaccatagacagagcc
aagtatatcatgaagcgtctgactaaggaaaatgtgaaaccatctggaagacagattggg
aaactcagccatgccaatcctaccattttatttgattatattttatcacaaatacaaaaa
tacgataacttaataaccccagttgttgattcgctgaaatacctcacttcactgaattac
gacgtcttggcgtattgtatcatcgaagctctggcaaaccccgagaaggagagaatgaag
catgacgacaccactatctcgagctggctgcagagtctggctagcttctgtggtgctgtt
ttcagaaaatacccgattgaacttgctggtctacttcaatacgtagccaaccaattgaaa
gctgggaaaagctttgatttgcttattttaaaagaggtagtacaaaaaatggcagggata
gaaattacagaagaaatgacaatggaacagttggaagccatgactggtggagaacaacta
aaagctgagggtggatactttggccaaattaggaatacaaagaagtcttctcagaggttg
aaggatgcattactggaccatgatcttgcccttccgctatgcctgcttatggctcaacag
agaaatggtgtgatctttcaagaaggaggggaaaaacatctgaagctggtgggaaaactg
tatgatcaatgccatgacaccctggtacagtttggtgggtttttagcatccaatctgagc
acagaggattacattaagcgagtgccttcaattgacgttctttgtaatgagttccacacg
cctcatgatgctgcgtttttcctctcaaggcccatgtatgcacaccaaatttcatcaaag
tatgatgaacttaaaaaagctgaaaagggaaataaacagcaacacaaagttcacaaatac
attacagcatgtgaactggtgatggctccagttcatgaagctgtgatttctctacaccct
cccaaggtttgggatgacatcagtcctcagttttatgccacattctggtctctgactatg
tatgaccttgctgtcccacatagcagctatgacagagaagtcaataaacttaaagtgcag
atgaaagccatagatgacaatcaggaaatgcctccaaataaaaagaaaaaagaaaaagaa
cgttgcactgctcttcaggacaagctccttgaagaggagaagaaacagttagagcatgtt
caaagagttttacagagactgaaattagagaaggacaactggcttctggcaaagtctacc
aaaaatgagactatcacaaagtttttgcagctatgtatatttcctcgctgcattttttcg
gcaatagatgcggtttattgtgctcactttgtagaactggttcatcagcagaaaacaccc
aacttctccacgcttctctgttatgatagagttttctctgatattatatatacagtagca
agttgtactgaaaatgaagctagtagatatggcaggtttttgtgctgcatgctggagact
gtgactagatggcacagtgacagagtcatatatgagaaggaatgtggcaactatccaggc
ttcctaactatattacgagcaactgggtttgatggtggaaataaagctgatcaattggat
tatgagaatttcagacacgtggtgcacaaatggcactataaattaactaaggcttctgta
cactgccttgaaactggtgaatatacacacatcagaaatatcctgattgtgctgaccaaa
atccttccatggtatccaaaagtgttgaacctgggccaagccttggaaagaagagtacat
aagatatgtcaggaagagaaagagaagagacctgatctatatgcattggctatgggctat
tctgggcagttgaaaagtaggaagccttttatgatacctgaaaatgaattccaccacaaa
gacccacctgccaggaatgctgtagctgcaacagtacaaaatgggccaggtggtgctggg
atgcctacatctctcacaataaatacagcgaaactggaggaaagcgctgctgaagagact
gataaactaaaggagaagtctcagggtactgtgaaagtcattaataaaactgtcaatgct
acaccgaaggtgacaacaagcaatggaaacagtgcttctaatagcaaaattattaaagag
aaagatgataaagaaaaaagcgggaaggaaaaagataaagaaaagaaagaaaagattcca
gctaccactccagaggcgaaggcacttgggaaggatgggaaagataaaccaaaggaagaa
cgggcaaataaagatgagaaaccaagagagattaaggagaaaacaccgaaatctgacaaa
gagaaggagaaggccaagaaagaagaaaaagcttcaaaggaagaaaaatccaagacaatt
gttaccaccattgagtcaaagtcagttacagaaaaggagagagagaaggagccatccaga
gaaaaagatgtagcaaaggatatgaaatccaaggaaaatactaaaggaggagaaaagatt
ccagtagctgggtccttgaagtctcctgttccccgatcagaaacatcagaatgtgagagg
gaacaaaaacgccgcaaagttgatatccattcttctccatcacattcctcaacagtaaag
gacaacctcaacgaactcaaggactcttcaacaaagcactacattaaccacactactcca
acactgtccaagagtaaagagagagaagtggacaagaaagacttggacaagtcaagggaa
agatccagagagagagagaagaaagaggaaaaggacaggaaagatcgaaaaagggatcat
tccaacagtgaccgagaggtgccacaggattcaactaaacggcgcaaggaagaaaatggg
acaacaggttcttcaaagcacagtaaaagcgaaagtccttctgattctcctcgttcaaat
gaaaaagagagggagaagagcaaatcaaaatcttcaggaaaagaaaaaggtgactcaatc
aaagcagaaaagatggagaagagctcctctggtagcaaaaaggaatcgagacatgacaaa
gagaaagaaaagaaagaaaaacgagacagcactggagggaaagaagaaaagaaacatcat
aaatcttcagacaagcacagataa
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integrated database retrieval system
