Lagopus muta (rock ptarmigan): 125699683
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Entry
125699683 CDS
T09141
Symbol
SMARCA1
Name
(RefSeq) probable global transcription activator SNF2L1
KO
K11727
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125699683 (SMARCA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmut03036
]
125699683 (SMARCA1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Chromatin remodeling factors
NuRF complex
125699683 (SMARCA1)
CERF complex
125699683 (SMARCA1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
CHDII_SANT-like
AAA_14
Motif
Other DBs
NCBI-GeneID:
125699683
NCBI-ProteinID:
XP_048815452
LinkDB
All DBs
Position
13:14114532..14145081
Genome browser
AA seq
1031 aa
AA seq
DB search
MEQGAVAASARLDGEVPSTSAASAQEPGAEEKNDPPFQLKLPPKAARPEKEIDPEYEEKM
KADRAKRFEFLLKQTELFAHFIQPAAQKSPTSPLKVKLGRPRIKKDEKQSLISAGDYRHR
RTEQEEDEELLSESRKTSNVCIRFEESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILA
DEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDK
DARAAFIRDVMMPGEWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIV
REFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL
HAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKM
RLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLL
FSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGL
GINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIK
LRLDSIVIQQGRLIDQQSNKLAKDEMLQMIRHGATHVFASKDSELTEEDITTILERGEKK
TAEMNERLQKMGESSLRNFTMDTEMSLYNFEGEDYREKQKLSMMEWIEPPKRERKANYAV
DAYFREALRVSEPKVPKAPRPPKQPNIQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP
DLPNAAQVQKEEQKKIDESMPLNPEETEEKEKLLTQGFTNWNKRDFNQFIKANEKYGRDD
IDNIAREVEGKSPEEVIEYSAVFWERCNELQDIERIMAQIERGEARIQRRISIKKALDAK
IARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKENVYEELRQCVRNAPQFR
FDWFIKSRTAMEFQRRCNTLISLIEKENMEIEEKERAEKKKRGAKVTSSQKRKADLAAEN
SGKKDAKKVKS
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggagcagggagccgtggctgcctcagcccgcttggatggcgaagtgccctccacttcc
gcggcctccgcgcaggagcctggcgccgaggagaaaaatgatcctccatttcaactcaag
cttcctcctaaggcagccaggcctgaaaaagagattgacccagagtatgaagagaagatg
aaagcagatcgtgcaaaaagatttgaattcctcctgaagcagacagaactcttcgctcat
tttatccagcctgcagcacaaaagtcaccaacatctccactgaaagtcaagctgggacgt
ccgcggataaagaaggatgaaaagcagagtttgatctcagctggggattatcgtcacagg
cgcacagaacaggaagaagatgaagaactgttatcagaaagtcgaaaaacatctaacgtg
tgcattcgatttgaggagtctccttcatatgtgaaaggaggaacgctaagagattatcaa
gtcagaggtctgaactggatgatctcactgtatgaaaatggcgttaatggcattctggca
gatgaaatgggtcttggtaagactctgcaaacaatagcattgttgggctatctgaagcat
tatcgaaacattcccgggccacacatggtcctggttccaaaatcaactctgcacaattgg
atgaatgaatttaaacgctgggttccttcattacgtgccgtttgccttattggagataaa
gatgccagagctgcttttatccgcgatgttatgatgcctggtgagtgggatgtttgtgtt
acatcatatgaaatggtcatcaaagagaaatcagtcttcaaaaaatttaactggaggtac
ctcgtaattgatgaagcacacagaataaagaatgagaagtctaagctgtcagagattgtc
cgggagttcaagacaacaaacagattgctgcttacagggactcctttacagaataacctc
catgaactgtgggcattgcttaattttcttctacctgatgtctttaattctgcagatgat
tttgactcatggtttgataccaaaaattgtcttggtgatcagaaacttgtagaaagactt
catgctgttttgaagccatttttattgcgtcgcataaaggctgaagttgaaaagagtttg
cctccaaagaaagaagtaaaaatttatcttggactcagcaaaatgcagagggaatggtat
acaaggatcttgatgaaagatattgatatcctaaattcagctgggaaaatggataagatg
cgtctgctgaacattctgatgcagttacggaaatgctgtaaccatccgtacctgtttgat
ggtgctgagcccggccctccttacaccactgacacacatctcatcactaacagtggtaaa
atgttagttctggataaactgctggcaaaactcagagagcaaggctccagagtgctgctt
ttcagtcagatgacccgtttattggatattttggaagactattgcatgtggcgtgggtac
gagtactgccgactcgatgggcagacgccacatgaagaaagagaggaagcaatagatacc
ttcaatgctcccaacagcagtaaattcattttcatgttgagtaccagagctgggggtcta
ggaattaatttggcaactgctgatgtggttatcctgtatgattcagattggaaccctcaa
gtagatctgcaagccatggatcgtgcgcatcgtattggtcaaaagaaaccagtacgggtg
ttccgccttatcactgataatactgttgaagagaggattgtagaaagagctgaaataaaa
ctgaggctggactctatagttatacaacaagggaggctcatagaccagcagtctaacaaa
ttggcaaaagatgaaatgctgcaaatgatccggcatggagctacgcatgtctttgcttcc
aaagacagtgagctgacagaagaagacataaccactattttagaaagaggagaaaagaag
acagctgaaatgaatgaacgactgcagaaaatgggggagagctctttaaggaatttcact
atggacacagagatgagcttgtacaactttgaaggtgaagattatagagaaaaacaaaag
ctgagcatgatggaatggatagagcctcctaaacgagaacgcaaagctaattacgcagtt
gatgcgtatttcagagaagccctgcgtgttagtgagcccaaagtcccaaaggctccacga
cctccaaaacagccaaatattcaggatttccagtttttcccaccgcggttatttgaactt
ctggaaaaagaaattctgtattatcgtaagaccatagggtataaggttcccaggaatcct
gacctccccaatgcagctcaggtgcaaaaagaagaacaaaagaagatagatgagtctatg
cctctgaatcctgaagaaactgaagagaaagagaaactactaacgcagggctttacaaac
tggaataagagagattttaatcagttcattaaagctaatgagaaatacggtcgtgatgat
atagataatattgcccgtgaggtggagggaaaatcgcctgaggaggtcattgagtactca
gctgttttctgggaacgttgcaatgaactgcaggacattgagagaattatggctcaaatt
gaacgaggagaggcaagaattcaacggaggatcagtatcaagaaagcccttgatgccaaa
attgcaagatataaagcaccttttcatcagttgcgtattcagtatggaacaaacaaaggg
aaaaattacacagaggaggaagacagatttttgatctgcatgttgcacaagatgggcttt
gacaaagaaaatgtgtatgaggaattaaggcagtgtgtgcgcaacgctcctcagttcaga
tttgactggttcatcaaatccagaacagcaatggagtttcagagacgctgcaatactctc
atatctttaatagagaaagaaaacatggaaattgaggaaaaagaaagagctgaaaagaag
aaaagaggagcgaaagtcacatcgtcacaaaagagaaaagcagacctggctgctgaaaac
tctggaaagaaagatgctaagaaagttaaatcgtga
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