Lagopus muta (rock ptarmigan): 125699910
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Entry
125699910 CDS
T09141
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125699910 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125699910 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125699910 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125699910 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125699910 (COL4A6)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125699910 (COL4A6)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125699910 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125699910
NCBI-ProteinID:
XP_048815902
LinkDB
All DBs
Position
13:13784648..13905669
Genome browser
AA seq
1700 aa
AA seq
DB search
MGPAPGRAGALLLLLPVLLLCLRAEPASAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRP
GPIGVQGPIGAPGFTGPEGLPGAKGERGAVGPPGPAGHKGNKGSMGVPGFQGINGIPGHP
GQSGPRGPPGLDGCNGTIGSPGVSGADGFPGIPGLPGRPGPKGLKGEPVFAQGSLKGMKG
ENGLPGLDGISGSKGFPGPTGPAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGD
VGLPGPPGPPPSTGILEFMGFPKGKQGEKGEPGPQGLPGDKGLPGLPGFGGVGEKGEKGV
PGLPGGRGLLGLDGSNGIPGRKGHPGIPGYPGLDGVEGTKGEVGDIGPPGPPIIVDKEGV
VISGAPGDPGNPGIPGPPGDEGISGLPGFPGVPGFPGLERDGMGPGGSPGIPGVKGEMGE
PGRATVGSPGAPGRDGLPGLPGAPGLPGSSRPSFLPDGILDGRTGAPGEPGQRGLPGALG
PKGYKGDAGDCACDGGITRAGLKGISGPQGPPGSRGVPGIKGVSGDPGTVGAPGLRGPLA
SAGQQGLPGHKGEKGDSSYATGRGAPGDRGATAPIGPSGFPGTPGRDGLPGLPGPPGPPG
DGGLGFPGEKGLPGLPGSKGRPGEIGSPGIGYPGPAGLRGPPGDPGMDGSPGQAGLPGPP
GITLPCIVPGAYGPPGTPGLPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGIISLQGEP
GFPGPRGEQGSQGLPGLDGTDGLPGKMGASGLAGTKGAPGDVFGAESGAQGERGRPGLSG
DKGLAGDLGFPGPKGLDGRPGLLGVKGELGNPGYSGVPGLRGPPGPGGPFGIKGKPGPLG
SAGLAGAPGLPGVKGVTGDVGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPG
FFGPKGEKGSSGLLGFPGMPGLPGVPGVNGIKGTPGTVGEKGSPGVLGLQGQKGDRGDVG
PPGLPVLGAQEQALQLKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPVGSASRER
GFHGDQGLPGPSGQLGLPGQKGARGIIGFPGMPGERGSDGITGILGFPGPIGLPGPKGDQ
GESAGVPGTAGVKGERGDPGFPGERGREGLKGESGYPGSTGVNGIKGGPGDLGQEGPAGI
PGNAGLRGFSGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGL
SEVGLKGPAGLPGLKGEEGSPGLGRGAVGFPGPKGSSGDMGPPGPVGLPGLPGTPGVSLP
SDIRGRPGDAGHPGLDGSSGLPGPPGPRGPPGPAFDQGDTGNPGFPGVPGLQGGKGDVGP
PGPIGLPGVSGFKGVRGEPGLMGMPGKDGPPGDPGYPGLKGEMGRRGLPGQPGAPGVTPQ
AEEITAPAGLPGLPGIDGVPGFDGDPGFQGPVGKPGAKGLPGRSGLKGRDGLPGSPGIAG
DPGPLGAPGPQGFEGAAGKPGALGLPGMPGRSVGVGYTLVKHSQSDQVPPCPVGMNKLWD
GYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPI
PMMPVSSSQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGA
EGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVGAPPSET
LKAGQLRTRVSRCQVCMKNL
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgggcccggccccggggcgcgcaggggcgctgctgctgctgctgccggtgctgctgctg
tgtctgcgcgccgagccggcgagcgcgggtggaaagaagtcttacagtggaccatgtgga
ggacgcgactgcagtgctggatgcaaatgtttcccagagaagggtgccaggggtcggcca
ggaccaattggggttcaaggaccaataggtgctcctggatttactggtccagagggtttg
ccaggagcaaaaggtgagagaggagcagtgggcccccctggaccagctgggcacaaaggc
aacaagggttcaatgggagttccaggatttcaaggcatcaatgggatcccaggtcaccct
ggccagtctggacccaggggtccacctggcctcgatggctgcaatggaaccattgggagt
cctggtgtttctggggcagatggatttcccggcatacccgggctgccgggtcgtcctggc
cccaaaggtctgaaaggagaacctgttttcgctcaaggcagccttaaaggaatgaaggga
gaaaacggtcttcctggtttggatggtatttctggctccaaaggttttccaggtccaaca
ggtcctgcaggccctataggattaccaggtttgcaaggtccagtgggtcctcctgggcca
ccaggtccaaaaggtaatatgggattaggctttcaaggagagaaaggagaaaaaggtgat
gtaggactgcctggccctccgggtccccctccatcgactggaatactagaattcatggga
ttcccaaaagggaaacaaggagaaaagggtgagccaggccctcaaggattgcctggagac
aaaggattgcctggactgccgggctttggtggtgttggagaaaaaggagaaaaaggtgtg
cctggtttgccaggtggcaggggtcttttggggctggatggatctaatggcattccaggg
agaaagggtcatccaggtattccaggctatccaggactggatggagttgaaggcacaaag
ggtgaagtaggtgacattggtcccccaggccctcctatcattgttgacaaggaaggtgta
gtaatttcaggtgccccaggtgaccctggaaacccaggaatacctggtcctccaggagat
gaagggatcagtggcctaccaggctttccaggagttccagggtttccaggcctggagaga
gatggaatgggccctggagggtctccaggtattcctggtgtgaaaggtgaaatgggagaa
ccaggaagagcaacagttggatcaccaggcgctccaggaagagatggtttgcctggtctg
ccaggagcaccaggattgcctgggtcatcacgcccttcatttctcccagatgggatcctg
gatggaaggactggtgccccaggggagcctggacaaagaggacttccaggagctttgggt
ccaaaaggttacaaaggagatgcaggtgattgtgcttgtgatggaggaattacaagagca
ggtctaaaaggcatctcaggtccacagggtccaccaggaagtcgtggtgtgcctgggatt
aaaggtgttagtggagacccaggcactgtgggtgcaccaggactgcgaggccctctggct
tcagctggccagcaaggtcttccaggccataagggagaaaaaggtgattcatcctatgca
acaggcagaggtgctcctggggaccgtggtgccactgcacccataggaccatcaggcttc
ccaggaactcctggcagggatggacttccaggtttgccaggcccaccaggtccaccaggt
gatggtgggctaggtttccctggtgaaaaaggtctgccaggattacctggctccaaaggc
cgtcctggagagatcggttctcctggcattgggtatcctggccctgctggacttcgtggg
ccgccaggtgacccagggatggatggttctccaggacaagcaggtctgccaggccctccg
ggtatcaccttgccctgcatagttcctggagcatatggtcctcctgggactcccggcctt
cctgggttgccaggtcccaaaggcagcaaaggctttcctggcattccggggcagcctgga
ttacatggatctaaaggacagccagggtctccaggaataattagcttgcaaggggaacct
ggtttccctggacctcgaggagagcaagggtcacaaggacttccaggattggatgggaca
gatggtttgcctgggaagatgggtgcttcaggcttagctggaactaagggagctcctgga
gatgtatttggtgctgagagtggagctcagggggagcgtggccgacctgggctctcaggg
gataaaggacttgcaggtgatcttgggtttccaggaccaaaagggctggatggcagacca
ggcctcctaggtgttaaaggcgagctgggtaatccagggtattcaggtgtccctggattg
cggggacctcctggtcctggaggtccttttggcattaagggcaaaccaggaccactggga
tcagctggccttgcaggagcaccaggacttcctggagtcaaaggagtgactggggatgta
ggtcctcaaggccctgctggtatgaaaggcttcccagggcttgatggtgctcctggacct
cctggggaaagaggattcttaggaccacctggaccttttggtcaagatggacgtccaggt
ttctttggaccaaaaggtgaaaagggatcttctggcctccttggtttcccaggcatgcca
ggcctgcctggtgtccctggggtcaatgggattaaaggaactcctggcacagtgggagaa
aaaggaagccctggagttctgggacttcaaggtcaaaaaggtgacagaggtgatgtaggt
ccacctggtcttcctgttcttggggctcaagagcaggcactgcaattgaaaggagacaaa
ggagatcctggattagctggacttggaggattcccaggacccagaggtgataaaggaatc
ccaggaagccgtggacagcctggtcttcctggacctgttgggtcagcaagcagagagaga
ggttttcatggtgaccaaggcctccctggtccatctggacagcttgggctgccaggacag
aagggtgcacgtggtataataggatttccaggaatgccaggagagaggggttcagatggt
atcacaggaatacttggattcccaggacctattggcctccctggtccaaagggtgaccag
ggagagtctgctggtgttcctggcactgctggagttaaaggagagcgaggggacccagga
ttcccaggagagagagggagagaaggactcaagggtgaatcaggctacccaggaagcact
ggagtgaacgggattaaaggtggcccaggagatcttggccaagaaggaccagcaggaatc
cctggaaatgctggactaagagggttctctgggccaccggggcctccagggcagcctgga
tctgttggattcccaggagctcgtggaacagcaggaccaaaagggttccatggatttcca
ggtttaaatggtctgaatggcttgccgggcacaaaagggtctcctggaacaccaggtctg
agtgaagttggactgaaaggccctgcgggtctccctggtctgaagggtgaggaaggttct
ccaggcttgggtagaggagctgtaggattcccagggccaaaaggctcatcaggagacatg
ggtcccccaggtcctgtgggactgcctggcttgccaggaactcctggagtttctcttcct
tctgatatacgtgggagacctggggatgctggccatccaggacttgatgggagttcaggc
cttccaggtcctccgggaccacgagggccccctggaccagcttttgaccaaggcgacaca
ggcaatccgggtttccctggtgttcctggcttgcaaggtggtaaaggtgatgtgggacct
cctggtcccattggactccctggtgtatctggattcaaaggtgtcagaggcgagcctggt
cttatggggatgccaggtaaagatgggcctccaggggatcctggttaccctgggctgaaa
ggtgaaatgggacgccgaggtctccctggccaaccaggggctccaggtgtaaccccacag
gcagaagaaatcacagcccctgcaggcttaccgggtctgccagggattgatggtgttcct
ggctttgacggagatcctggattccagggcccggttggaaagccaggtgcaaagggcctg
ccaggcagatctggtttgaaaggacgtgacggtttacctggatcacctggcatagctggt
gacccgggacctttgggtgccccaggacctcagggatttgaaggtgccgctggaaagcca
ggcgcgctcggcttgccgggaatgcctggtcggagcgtgggtgtcgggtacaccttggtg
aagcacagccagtcagaccaagtcccgccttgtcctgttggcatgaacaagctctgggat
ggctacagcttgttgtacgtggaggggcaggaaaaatcacacaaccaggatctcggtttt
gctggctcttgtttgccccgcttcagcactatgccttttatttactgcaacatcaatgaa
gtgtgctactatgccagccgaaatgacaagtcctactggctgtccaccaccgctcccatc
cccatgatgccagtgagcagcagtcagatcccacagtacatcagtcgttgctccgtgtgc
gaagcaccatcccaggctgtggctgtgcacagccaggatatcaccatccctcagtgtccc
cttggttggcgcagcctctggataggatactccttcctaatgcacacagcagctggtgcc
gagggtggaggtcagtcccttgtctcacctggttcttgcctggaggatttccgtgctaca
cccttcattgaatgcaatggtgccagaggaacgtgccactactttgcaaacaaatacagc
ttctggctgaccactgttgagcagtcgcagcagtttgttggtgctcctccctccgaaact
ctgaaagcaggacagcttcggacgagggtcagccgctgccaagtgtgcatgaagaacttg
taa
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