Lagopus muta (rock ptarmigan): 125699948
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Entry
125699948 CDS
T09141
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125699948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125699948
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125699948
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
125699948
NCBI-ProteinID:
XP_048815979
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All DBs
Position
13:11970306..11995222
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AA seq
558 aa
AA seq
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MATELEPPAAGAVSGGAPLEAEEDEEHWLYGDDTTGKQEDGPTSGHAESSHPLQDAPQEN
RPVGSEDREVSQHALPSGEDDEEDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPAQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGASGSGSSHWEYSGSRRERERERERERDRDRTPTTSEYNNEDERYRYYGRERSYDFER
DYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKRSKEE
KEASEDGTQEGEEQDSKE
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggcggccggggccgtgtcgggcggggcgccactggag
gcggaggaggatgaggagcactggctgtacggcgatgacaccactggtaagcaagaagac
ggaccaacttctggacatgcagaatcttctcatcctctgcaagatgctcctcaggagaac
cggcccgtcggcagtgaagacagagaggtgtcacagcatgcccttccaagtggagaagat
gatgaagaagacagtgatagtgacagcgatgatgacgacgtgaaagttactattggcaat
attaaaactggagcaccatcgtacatgggaactcctatgaatctgaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagttgcagcccaaaggtattgatttagatgcc
gcagggaatataaacggattgcctgttatagaagtggatttagattcgtttgaagacaaa
ccatggaggaaaccaggtgctgatctttctgattactttaattatggattcaatgaagag
acgtggaaagcttattgtgaaaagcagcgacggcttcagcttgggctggatcctgctcct
cccatcagcactgaaaataaaatcacagtccagcaaggaagaacaggaaatgctgaaaaa
gaagtggaaaacaatatcatcaaaacagaattcaaaacagacttcttggctcttgtcgga
gggcgcatgaaagctgggcctcctcccaataggaagctgggtgggacaattgatgtgatc
ggcggccaggctggcacaattaggagagtggaaggaagacgacgtgataagcatgcctct
gaagaaaatcccatccaggttctcggggatcatggaagcaagccccagcccccgcagcag
ccccagcagccggcgcagccgcagcagcccccccagcagcagccctttgctcccccagcc
ggtcctccgcctcccccacttgccggaccgccgccaccgcatttcctgcatccccctcct
cctgtcacatctgtgccaccgccactgcaccctccaggtctgccaccacccggtccaatt
ccagggctcttcccgccgcctctggccccgccaccagctctcctcatcccaacgctggat
gggcagccagccagctacaacaacagacagccccctccgtttggctacaactctgcagac
tcgggtttcatcagctacccacccatctccacgtcccacacgccctgggtgaccacggtg
gacaaaggcgcgagcggctctggcagcagtcactgggagtattcgggctcacggcgcgaa
cgggagcgggaacgggagcgggaacgggacagggaccgcacgcccaccaccagcgagtac
aacaacgaggacgagcggtaccgctactacggccgggagcgcagctacgactttgagcgg
gactatcggcgcagccgggaccgcagccgggagcgggaggaccgacaccgggagcgcagg
caccgcgacaaggaggagagcagcaagcacaagtcctcgaggcgcaaacagcacgagagc
gaggaaggggagagccatcggcgccacaagcacaagaagaacaagcgcagcaaggaggag
aaggaggccagcgaggatggcacgcaggagggagaggagcaggacagcaaggagtga
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