Lagopus muta (rock ptarmigan): 125699971
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Entry
125699971 CDS
T09141
Symbol
TAF1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125699971 (TAF1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lmut01001
]
125699971 (TAF1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125699971 (TAF1)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125699971 (TAF1)
Enzymes [BR:
lmut01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
125699971 (TAF1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
125699971 (TAF1)
Protein kinases [BR:
lmut01001
]
Serine/threonine kinases: Other
TAF1 family
125699971 (TAF1)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125699971 (TAF1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
125699971 (TAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
125699971
NCBI-ProteinID:
XP_048816026
LinkDB
All DBs
Position
13:complement(2184011..2211398)
Genome browser
AA seq
1862 aa
AA seq
DB search
MSDSESEEEADGGRAEPFSLAGFLFGNINEAGQLEGDSVLDKESKKHLAGLGALGLGNLI
TEITASEDESAEADGAQLDEEGWVKSTEDAVDYSDINEVAEDESRRYKQAMGSLQPIGRQ
DEDEDDYDADCEDIDSKLMPPPPPPPVPGKKEDEKDAAATGIVQRDASKLLPSVTELFPE
FRPGKVLRFLRLFGPGKNIPSVWRSARRKRKKKHRELAQEVQIQEGEVGVESGTEGKSPW
EYEFAAPPPPEQCLSDDEITMMAPVESKFSQSAGDTDKVTDTKPKVAEWRYGPAQLWYDM
LGIPEDGSGFDYGFKLKEKTEQEVKGQTDEKDAELVDEKDDLLADEHFLMVTQLQWEDDV
IWNGEDVKHKGTKTQRASLAGWLPSSMTRNATAYNAQQGLNRSGSLLNPPIPLAQKPGVA
GVLGMAKGKEKQTPEQQVSLDEDKPWYSIFPIDNEELVYGRWEDNIIWDDQAMETYLDPP
VLTLDPNDENIILEIPDEKEEMTLNSPSKENKKESSLKKSRILLGKTGVIKEEPQQNMSQ
PEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPMKLRQFHRP
PLKKYSFGALSQPGPHAVQPLLKHIKKKAKMREQERQASGGGEMFFMRTPQDLTGKDGDL
ILAEYSEENAPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQ
LLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYVRELVDIFVVGQECPLYEVPGPNSKR
ANTHIRDFLQVFIYRLFWKSRDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMD
SNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFFAPEEENEED
FQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDD
KEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQAR
SGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEILSTDTDSSSAEDSDFE
EMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLGEDSGNDKDRGKKDRRDKKGLSSA
SGASANSHKDDDTASVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVIDAYCRI
RTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPKKLKER
PDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEELIK
VEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRR
RTDPMVTLSSILEGIINDMRDLPNTYPFHTPVNPKVVKDYYKIITRPMDLQTLRENVRKR
QYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINP
LLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIANPMDLETICKNI
SKHKYQNRETFLDDVNLVLANSIKYNGPDSQYTKTAQEIVNICYQTLAEYDEHLTQLERD
ISTAKEAALEEADLESLDPMTPGPYTPQMRQGRGRLGEEDSDVDIEGFDEDDDGKPKTPA
PEVEDADGDLADEEEGSTQQPQASVLYEDLLMSDGEDDDDGSDEEGDNPFSSIQLSESGS
DSDVETNAVRPKQPHVIQENTRMGMDNEESMMSYEGDGGEASQVMEDSNISYGSYEEPDP
KSNTRDTSFSSIGGYEISEEEEEEEEQRCGPSVLSQVHLSEDEEDSEDFHSIAGDSDLDS
DE
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcggagagcgaggaggaggcggatggcggccgcgcggagccgttctcgctg
gccggcttcctcttcggcaacatcaatgaggccgggcagctcgaaggggacagcgtcctc
gacaaggaatccaagaagcacctggccgggttgggtgccctcggactgggcaacctgatc
actgagatcacagccagcgaggacgagagcgcggaggctgacggagctcagctggatgag
gaaggttgggttaagagcacagaagatgctgttgattactcagatattaatgaagtggca
gaagatgaaagccgtcggtataagcaggcaatgggcagcctgcagccgatcggaaggcaa
gatgaagacgaggatgattatgatgccgactgtgaagatattgattccaagctgatgccg
ccaccgccaccacctccagtgcctggaaagaaagaagatgaaaaggatgcagctgccact
ggaatcgtgcagcgagacgcttccaagttgttgccaagtgttacagaactcttcccggag
tttcgaccaggcaaggtgctgcgtttcctccgtctcttcggccctgggaagaacatcccg
tccgtttggcgcagcgcccgcaggaagcgcaagaagaagcaccgggagctggcccaggaa
gtgcagatccaggagggtgaagttggagttgagagcggaacggaaggcaaatctccctgg
gaatatgagtttgctgcccccccccctcctgagcagtgcctgtcagatgatgagattact
atgatggcacctgtggaatcaaaattttctcagtcagctggtgatacagacaaggtgaca
gatacaaagcctaaagtggcagaatggcgctacggcccagcgcagctctggtatgacatg
ctgggaatcccagaagatggcagtggatttgattatggtttcaagctgaaagagaagaca
gagcaggaggttaaaggacagacagatgagaaggatgcagagttggtggatgagaaggat
gatctgctagctgatgagcacttccttatggtgacacagctccagtgggaagacgatgtt
atatggaatggagaagatgtcaaacacaaaggaacaaaaacgcagcgggcgagtttggca
ggctggctgccatcaagcatgactagaaatgccactgcatacaatgcccaacaagggttg
aaccgcagtggctctttactcaatccacccattcctctagcacagaaaccaggtgtagca
ggagtcctaggtatggcaaagggcaaagaaaagcaaacccctgagcagcaagtttccctg
gatgaagacaagccctggtactccattttcccaattgataatgaagagttggtgtatggc
cggtgggaagacaatatcatctgggatgatcaggcaatggagacctacttggatccccct
gtcttgacacttgatccaaatgatgaaaacatcattctagaaattcctgatgaaaaggaa
gaaatgactttgaattctccatccaaggaaaacaagaaagagtcttctctaaagaagagc
cgaatactgttgggaaaaacaggtgtcataaaggaagagccacagcagaacatgtcccag
cccgaggtgaaggatccctggaacctctccaatgatgagttttactaccctaagcagcag
ggacttcgaggaacctttggaggcaacatcatccagcactctattccagcagtggaactt
cgccagccattctttcccacccatatgggtcctatgaagctccgacagtttcatcgccct
cccctgaagaaatactcctttggtgccctgtcccaaccagggccacatgctgtgcaaccc
ctactgaagcatataaaaaagaaagctaagatgagagagcaggagcgtcaggcttctggg
gggggtgagatgttcttcatgcgcacaccgcaggacctgactggcaaagatggagatctc
attcttgctgaatacagcgaggaaaatgctcctttaatgatgcaggttggcatggcaacg
aagattaaaaattactacaaaaggaaacctggcaaagatcctggagctccagactgtaaa
tatggagagactgtttattgtcacacttctccattcctgggttctctgcatccaggccag
ctactgcaggcatttgaaaacaaccttttccgggcccctatctatttacataagatgcct
gagacagatttcctgatcatccgcacgcgacaaggctattatgtccgagaattggtggac
atttttgtggttggccaggagtgcccactttatgaagtacctggtccaaactccaaacga
gctaacacccatatcagagattttctgcaggttttcatttaccgcctcttctggaaaagc
agagaccgtcctcggaggattcgcatggaggacatcaagaaggcctttccctcacactca
gagagcagcatccgaaagaggctgaagctctgtgctgatttcaaacgtacagggatggac
tccaactggtgggttttaaagccggatttcagattgccaacagaggaagagatcagagca
atggtatccccagagcagtgctgtgcttactacagcatgattgcagctgagcagcggctg
aaggatgcaggttatggggagaaatccttctttgcaccagaagaagagaatgaagaggat
ttccaaatgaagattgatgatgaggtgcgcacggctccatggaacaccacacgagccttc
attgctgccatgaagggcaagtgtcttctagaagtgactggtgtagcagatcctactggt
tgtggtgaaggattttcttatgtgaagattccaaacaaaccaactcagcaaaaggatgat
aaggaaccccagcccgtgaaaaagacagtaactgggacagatgctgatcttcgtcgactt
tctctcaaaaatgccaaacagcttctgcgtaaatttggagtgcctgaggaggagatcaaa
aagctgtcccggtgggaggtaattgatgtggtacgcacgatgtctacagagcaggctcgt
tcaggagaaggtcctatgagcaaatttgcacgtggctctcggttttctgtagcagaacat
caagagagatacaaagaggagtgtcagcgcatttttgatttgcaaaataaggtcctggaa
tccactgagatcctgtcaacagacacagacagcagttcagctgaagacagtgactttgaa
gagatgggaaagaacattgagaatatgttacagaataagaaaactagttctcagctctct
cgggagagagaagagcaggaacgaaaggagttgcaaaggatgcttttgggagaagacagt
gggaatgacaaagacaggggcaaaaaggacaggagagacaaaaaggggctgtcatcagct
tcaggagcctctgccaactcccacaaagacgacgacactgcctcagtaaccagccttaat
tcctctgccaccggccgccgcctcaagatctatcgcacgtttagagatgaggatggcaag
gaatatgtgaggtgtgagacagtccgcaagccctccgtcatcgatgcctactgccgcata
aggactaccaaagacgaagagttcattcgcaaatttgctctgtttgacgagcagcaccgt
gaggagatgcggaaggagcggcgcaggatccaagaacaactacggcgattgaaacggaac
caagagaaagagaaactcaagggccctccagaaaagaagcccaagaaattgaaagaacgt
ccagatctgaaactaaaatgtggagcgtgtggtgcaattggccatatgaggactaataaa
ttctgccctctttactaccaaacaaatgccccaccttctaatcctgttgcaatgacagaa
gagcaggaggaagaactggaaaaaacagtcattcataatgataacgaagaactcatcaaa
gtagaaggaacaaaaattgtccttggaaagcaactgatagagagcgcggatgaggttcgc
aggaaatcgctggtcctgaagtttcctaagcagcagctccctccaaagaagaagaggcga
gtggggacaactgttcactgtgactacctgaatcgtcctcataagtccatccaccgacgt
cgaactgatcccatggtgacgctgtcgtccatcttggagggcatcatcaatgatatgagg
gatcttcctaatacatacccctttcacacgccagtcaatccaaaggttgtcaaagattac
tataagattattactcggcccatggatttgcagaccttgcgtgaaaatgttcgtaagcgg
caatatccatcccgggaggagttcagagaacacctggaactgattgtgaagaacagtgca
acgtacaatgggccaaagcactcactgactcagatatctcagtccatgctggatctgtgt
gatgaaaagctgaaggagaaagaagataaactggctcgattagagaaagcaatcaatccc
ctcctggacgatgatgaccaagtggccttttccttcattttggataacattgtcactcag
aagatgatggcagttccagattcttggccatttcatcatccagtcaataaaaagtttgtt
cctgattattacaaggtcattgctaatccaatggatctagagaccatctgcaagaatatc
tccaaacacaaataccagaacagggagactttcctggatgatgttaacctcgtccttgct
aacagcattaagtacaacgggccagacagtcagtacacaaaaacagcccaggagatcgta
aacatctgctatcaaactttagctgagtacgatgagcacctgacccaactggagagagac
atctctactgctaaggaagcagcactagaggaggcagatctggaaagtcttgatcctatg
accccaggtccctacactccacagatgcgccaggggcgaggtaggctgggcgaggaagac
tctgacgtagatattgaagggtttgatgaggatgatgatgggaaacctaagactccggcc
ccagaagttgaagatgcagatggtgaccttgctgatgaagaagaaggatcaacccagcag
ccccaggccagtgtcctgtatgaagatctgctcatgtcggatggagaggatgatgatgat
gggagtgatgaagaaggcgataatcccttctcgtctatccagctcagtgagagtggaagt
gattcagacgtggagaccaatgcagtgagacctaaacagcctcacgttattcaagagaac
acacgaatgggcatggacaatgaagaaagcatgatgtcctatgagggcgatggtggggag
gcatctcaggttatggaggacagtaatatcagttacggcagctacgaagagccggaccca
aagtccaacacaagggatacgagcttcagcagcattgggggctacgagatctccgaggaa
gaggaagaagaagaagaacagcgttgtggaccgagcgttttaagccaggtgcacctgtct
gaggatgaggaagacagtgaggattttcactccattgcaggagacagtgacctggactca
gatgagtaa
DBGET
integrated database retrieval system
