Lagopus muta (rock ptarmigan): 125700150
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Entry
125700150 CDS
T09141
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125700150 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125700150 (DDX46)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125700150 (DDX46)
Spliceosome [BR:
lmut03041
]
Complex A
U2 snRNP components
U2 related factors
125700150 (DDX46)
Complex B
125700150 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
125700150
NCBI-ProteinID:
XP_048816448
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All DBs
Position
14:complement(15362058..15381438)
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AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSPSPSKNRKTENRSRSKER
TEGVEVSKEKKKEKDDKEEEKDKDTNASTVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVTTKKAVVETEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
MEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GFAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMGTPGSS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVFVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtccaggcattatcggaagcgctctgcctcgcggggccgctctgggagc
cgctccagaagtcgttctccatctgacaaaaggaaacgggaggacaggcgctccaggagc
agagatcgggatcgcagacgggagcggtcgcgcagcagggacaagaggagatcccgttca
cgtgacaggaagcgccagagacgttcgaggagtagagaaagggaacggagtcgggagaga
agaagatcgaggagccgagagagaaggcgctccaggagcagaagtagaggcagacggtct
cgatcccccagtccgagcaagaacaggaagacagaaaacagatcaagatctaaagaaagg
acagaaggtgtggaagtttccaaagaaaagaaaaaagagaaggatgacaaggaagaagaa
aaagataaagataccaatgcatctactgtggccactgagaactttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaagtggagggaagagcagcgcaag
aaggcgatggagaacattggggaactgaaaaaagaaatcgaggagatgaaacagggaaaa
aaatggagcttggaagatgatgacgatgacgatgaggaaactgcagaaggagaaaaggaa
ggcaatgaggttgaagatgaagagttagatcctttggatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaagggtggaggtgggagtgaaaagaaa
tctggaccaactgttaccaaagtagtaactgtggtgacaaccaaaaaggcagttgtagag
acagagaagaagaaaggggaactcatggagaatgaccaagatgcaatggagtattcttca
gaagaagaggaagttgatcttcagactgccctaactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcacggaaaaatagaatatgagcccttcaggaaaaacttctat
gttgaagtacctgaactagctaaaatgacacaagaagaggtgaatgtgtaccgactggag
atggagggaataacagtcaagggaaaaggctgccccaaaccaataaaaacctgggtacag
tgtggaatttccatgaagattcttactgctctcaaaaaacacggctatgagaaacccaca
cccattcagagccaagctatcccagcaattatgaatggtcgcgacttgattggcattgct
aaaacaggaagtggaaaaaccattgcatttctgttgcccatgttcagacatattatggat
cagagagctttagaagaaggagaaggtcccatagctgtcattatgacacctactcgtgag
ctggccttgcagattaccaaggagtgtaagaagttctcaaagacccttggacttcgagtt
gtttgtgtgtatggaggaacagggattagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgg
gtgaccaatctccgcagagtcacctacgttgtccttgatgaagcagacagaatgtttgac
atgggttttgagcctcaggtcatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctacttttcccagagctatggaggcgttagctcggagaatcctaagt
aaacccatagaagtgcaggttggaggcagaagtgttgtctgttctgatgtggagcagcac
gttattgtgattgaagaggagaataagttcttaaagctactagagctactgggacattat
caggagaaaggatcagttatcatatttgtggacaaacaggaacacgctgatggcttgttg
aaagatttaatgagagcttcttatccctgcttgtctcttcatggaggcatcgatcagtac
gacagggacagcataatcaatgatttcaagaatggaacgtgcaaactgctggtggccaca
tctgtagcagcaaggggtttggatgtaaaacagttgatgctggtggtcaactatagttgt
cccaaccattatgaagattatgtgcaccgagcaggccggactggacgagctggtaataaa
ggatttgcatatacgttcattactgaggatcaggcacggtatgctggtgatatcatcaag
gctttggaattatctgggaatccaattcctgctgatttagagaagctctgggctgacttc
aaagaacaacagaaggctgagggaaagctgattaaaaagagcagtggattctctggcaaa
ggctttaagttcgatgaaacagaacaggccttggctaatgagagaaagaagctacagaaa
gcagctcttggcttgcaagattcagatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagatatgggaacaccaggatcatca
aacgctcctacgccatccgctggtaatgcagaaaaactggagattgctaaaagattggct
ttgagaatcaacgcccagaagaatctcggagcagaggcacaagtatttgtccccttccat
tttaaggacgtgatgcagcaggctacaaatgctatccttaggggaggcacaattcaagct
cctacagtatctgctaagaccattgcagagcaattggctgaaaaaatcaatgctaagctg
aattatgtacctatagagaagcaggaggaagagaaacaggatggtggacagaatgaatct
tttaagagatatgaagaagaattagagatcaatgacttcccacagactgccagatggaaa
gtcacctccaaagaagcgctacagaggatcagtgaatattctgaagctgctattacaatc
agaggaacttatttccctccaggcaaagaacccaaggaaggagagcgaaagatttatttg
gctatagagagtgccaatgaactggctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagcttattagattgcaaaattcataccaaccaaccaacaaaggaagatac
aaagttctatga
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