Lagopus muta (rock ptarmigan): 125700352
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Entry
125700352 CDS
T09141
Symbol
SOX30
Name
(RefSeq) transcription factor SOX-30 isoform X1
KO
K09271
transcription factor SOX15/30
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125700352 (SOX30)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125700352 (SOX30)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
125700352
NCBI-ProteinID:
XP_048816839
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Position
14:10996167..11004136
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AA seq
641 aa
AA seq
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MERGGGDCHGRDSVLDLCSQGPSGGQEAQAPLQETRVKAKELQQEDGGFPARLEGSKEAG
GELRCSPAPWGGKEKAKEDREKRGGEEQEDVEVVEIRGGVKEPRPGARADGDEDGAAVRA
SRGLAHAGGDGGVAQAGEGLGVLPEDLKIPLVLRPLPPGARIQVQGPLLPKLIQVSKGPV
SQVPLKMQTLLEPSVKIETKNVPLTVLPSDSGMPDTPFSKDKTGHVKRPMNAFMVWARIH
RPALAKANPNANNAEISVQLGLEWSKLTEEQKQPYYDEARKIKQRHREEFPGWVYQPRPG
KRKRYPLAVSAVFSSTTQNIITTNPVAVYPFSSPAFPAAMHSIQKNIGHPVCEAPSASRL
PPSSIQRPSPINLFRPAIASTTPVAVPAPTLPLRPVIASQHFAEPTQREARDVSSGSYCF
LKRSTPVVVDLSSRSSSATSNTSDRFSVPNSEFPKELSGISAYPRGVLLPQVTPLPHSHL
CESPPIGQAASLYGVPPQFSFYHPYFVPGPHYIPSSTCPFSRPPFGCGNFSSSVPECFGF
YGDGYQKQEMKFSPLYRDYSFRGHPGGRIREDSRVCTDLEEVTYHSSHSEEGCISISPIS
QLDTGALENDLPATPPSPSSIQLVNVTDSEDEEEKKVLQEL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggagcggggcgggggcgactgccacggccgggattctgtcctcgatctctgctcacag
ggtccctcaggcggtcaggaggcccaggcgcccctccaggagacgcgcgttaaagccaag
gagctgcagcaggaggatggaggcttccccgcccgtcttgagggcagcaaggaagccgga
ggggagctcaggtgctccccagctccgtgggggggaaaagagaaggcaaaagaggatcga
gaaaagcgcggcggagaagagcaggaagacgtggaggtggtggagatcagaggaggcgtg
aaggaaccccgtcccggagcgagggcggatggggacgaggacggtgctgcagtcagggcc
tcgcgcgggctcgcacacgccggcggtgatggcggcgtggcgcaggccggtgaggggctg
ggggtcctccctgaggacctgaagatccccctggtgcttcgccctttgccgcctggtgcc
cgtatacaggtccaaggccccctgctgccaaagctgatccaggtgtcaaaggggcccgtg
agccaagtgcctcttaaaatgcagaccctgctggagccttccgtaaaaattgaaactaaa
aacgttcccctcacagtactgccctccgattcaggtatgccagatactccattcagcaag
gacaaaactggccacgtaaagcgtccaatgaatgcatttatggtgtgggctaggattcac
cgacctgccctagctaaagccaaccccaatgccaataatgctgaaatcagtgttcagctg
gggttggagtggagcaaactgactgaagagcagaaacagccctattatgatgaagctcgg
aaaataaaacaaaggcacagagaggaatttcctggttgggtttatcaaccacgaccaggc
aagaggaagcgttatccactggctgtctctgctgtattttccagcactacccagaatatc
atcactacaaatccagttgctgtttatcccttttcatcgcctgcatttcctgctgccatg
cacagtattcagaaaaatattggacatccagtctgtgaagctccttctgccagccggctg
ccaccttcttctattcagcgtccaagtccaattaatcttttccgacctgctattgcaagc
accactccagtagcagttccagctccaaccctgcctctgcgccctgtaattgcatcacag
cactttgctgagcctactcagagagaagctcgtgatgtatcatctggatcctattgcttt
ctgaagagatcaacaccagttgttgttgatctctccagtagaagttcaagtgccacatca
aacactagtgacagattttctgtccctaatagcgagtttccaaaggagttgtcagggatt
tctgcttatcctagaggtgtacttcttccccaggtcacacctcttcctcattcgcatctc
tgtgagagtcctcccattgggcaggcagccagtctgtacggagtacctcctcagttttcg
ttttatcacccctactttgttcctggacctcactatatcccctcaagcacgtgcccattc
agccgtcccccttttggctgcgggaatttctccagctcagtgcctgaatgctttggcttc
tatggagatggctaccaaaagcaggagatgaagttttcacctctgtacagagattactct
ttcaggggacacccagggggaagaatacgtgaagactcacgtgtctgcacagacctcgaa
gaagtgacctatcacagcagccacagtgaggagggttgtattagtattagccccatatca
cagctagacactggagcacttgagaatgatttgccagccaccccaccttctccttccagc
atccagctagtcaatgtgactgacagcgaggacgaagaagaaaaaaaggtgttgcaagag
ctgtga
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