Lagopus muta (rock ptarmigan): 125700394
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Entry
125700394 CDS
T09141
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125700394 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmut01009
]
125700394 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125700394 (PCDH1)
Protein phosphatases and associated proteins [BR:
lmut01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125700394 (PCDH1)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Protocadherins
125700394 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
125700394
NCBI-ProteinID:
XP_048816900
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All DBs
Position
14:1787015..1834193
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AA seq
1225 aa
AA seq
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MQTPLDQRSGSRHGAQHRPHPTPLRHRMKTLASCLALWLLCQLPALACGTRVVYKVQEEQ
PPNTLIGSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLMP
GEPCYLEFEVSITDLIQNNSPRLLEGQIEVLDINDNTPNFASPVLTLTIPENTNIGALFS
IPPAMDRDSGLNGVASYELLAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITIVDMNDNAPKFEKALYEAELSENSPVGHSVIQVKANDSD
QGANAEIDYSFHQASDVVRRLLRLDRNTGLITVQGPIDREDVSTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKDYTIEIVAVDSGNPPLSS
TNSLKVQVVDVNDNAPVFSQSFTEVAFPENNEPNDLVMEVSASDADSGSNAKLVYSLVTD
PSSKDSFTIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVAINIMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDTGVNAELTYSITGGNPFELFQISPQSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHETCKDSPMEEI
PLTQTSDFQPATTPSSQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgccgttggatcagcgctccgggagccggcacggagcgcagcaccggccgcat
ccaactcccctgaggcacaggatgaagaccctcgcctcctgcctggccctgtggctcctc
tgccagctgcctgcccttgcttgcgggacgcgtgtggtctacaaagtgcaggaggagcag
ccccccaacacactcatcggcagcctggcctctgactacggcttccctgacgtggggcac
ctctacaagctggaagtgggggccccgtacctacgtgtggatggcaagacgggagacatc
tacaccacagagacctccatcgaccgggagagtttgcgtgagtgccagcacctgatgccc
ggagagccctgctacctggagttcgaagtgtccatcactgacctgatccagaacaacagt
ccgcgcctgctggaggggcagatcgaggtgctcgacatcaatgacaacacccccaacttc
gcctcacccgtcctcaccctgaccatccctgagaacaccaacattggggctctgttctcc
atccccccagccatggaccgggactcggggctcaacggtgttgcctcctacgagctgctg
gctggccctgaggcacaggaactctttgggctgcaagtggctgaggaccaggaggagaag
cagccacagctgattgtcatgggaaacctggaccgggagcagtgggactcctatgacctg
accatcaaggtgcaggatgggggcaacccgccacgggccagcagtgcactgctgcgcatc
accatcgtggacatgaatgacaatgcacccaagtttgagaaggccctctacgaggccgag
ctgtctgaaaacagccctgtggggcactccgtcatccaggtgaaggccaatgactcggac
cagggtgccaatgccgagattgactactccttccaccaagcatcggatgtggtgcgccgg
ctgctgcgcctggaccgcaacacagggctcatcactgtccaggggcccatcgaccgtgag
gacgtcagcaccctcaagttctccgtcatggccaaggacaagggggctaaccccaagagt
gcccgcacgcaggtagtggtcaccatcaaggacatgaatgacaacgcaccctctatagaa
attcggggcattgggttggtcacccaccaggatggcatggcaaatatctcggaggacgta
ccagtagagacagcagtggctctggtacaggtgtccgatcgagatgagggcgagaatgct
gtggtgacctgtgtggtggctggggatgtccccttccagctgcggcaggctagcgaaaca
gggagcgacagcaagaagaaatacttcctgcagactaccacacctctggactatgagtcg
gtgaaggactacacaatcgagattgtggcagtggactcggggaacccgcccctttccagc
accaattcgctgaaggtgcaggtagtagatgtgaatgacaatgcgcccgtcttcagccag
agcttcaccgaggtggccttccctgagaacaacgagcccaatgacctagtgatggaggtg
agtgccagtgatgcagacagcggctccaatgccaagctggtttactcgctggtgaccgac
ccgtcctccaaggactccttcaccattgaccctgactctggagagattcgggtgaaagcg
gtgctggatcgtgagcagcgggaacgctacgagttcttggtggtggcggcagacaagggc
agccccagcctgaagggcacagcgtcggtggccatcaacatcatggataggaatgacaac
gaccccaagttcatgctgagcggctacaacttctcggtgatggagaacatgccacccctc
agccccgtgggcatggtgacggtgatcgatgctgacaaaggagaaaatgcccgaatccag
ctgtcggtagagcaagacaatggggattttgtcatccagaatggcactggcaccattctc
tccagcatctcttttgaccgggagcagcaaagtacgtacactttccggctcaaggctgtg
gatggtggggatccccccaggtctgcctacgtaggggtgaccatcaatgtcttggatgag
aatgacaatgctcccttcatcacctcgccctccaatgccacctacaagcacattctgccc
cacacgagccccggccagcaggtgagcaaggtcaaggcagaggacatcgacaccggcgtc
aatgccgagctgacctacagcatcacaggaggcaaccccttcgagctcttccagatctcc
ccccaaagtggagacatcacactggaaaaggagatcctgcgcaagcaccatggcctgcac
cgcttggttgtgcgtgtcaacgacaagggcaagccgtcacggcacggcacggccctggtg
cacttctatgtcaacgagactttggccaatcgcacactgctggacacactggtggggcac
agcctggacacaccacttgacatagacatcgccggggatcccgagtatgagcgcagcaag
cagagaagcaacatcctctttggagtcattgctggcattgtggctgtcaccttggtcatc
gtgctggttgtcctggtgcgttactgccgacagcgggaggccaagagtggctaccaggca
ggcaagaaggagaccaaagacctgtatgcacccaagcaggccagcaagagtggcaagagc
aagaacaaggtgaagaagagcaagtctccaaagccacccaagccaacagaggacgaggag
gagacagggctgcagaaatccctcaagttcaacctgatgaatgactctgtcagtgacagc
ccccgcatccacctgcccctcaactaccctccgggcagcccggacctgggccggcactat
cgctccaactcacccctgccctccatccagctgcagccccagtctccctccgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcaacgggctccgagcagtactcggactacagctaccgcaccaatccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggcccaggac
ctacaagacccctcccagcacagctactatgacagcgggctggaggagtcggagactccc
agcagcaaatcatcatcggggccccgcattgggccactggccctgcctgaggaccactat
gagcgcaccacgcccgatggcagcattggggagatggagcaccctgagaatgatctccgt
cccctgcctgatgtagccatgactgggacctgtacccgggagtgcacggagttcggccac
tccgacacctgctggatgcccggccaatcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaatggc
agccccagactctcagaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagacctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcatcccagaccaccaag
agggagatctacctgtga
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