Lagopus muta (rock ptarmigan): 125700480
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Entry
125700480 CDS
T09141
Symbol
IRF1
Name
(RefSeq) interferon regulatory factor 1
KO
K09444
interferon regulatory factor 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
125700480 (IRF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125700480 (IRF1)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
125700480 (IRF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
125700480
NCBI-ProteinID:
XP_048817088
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Position
14:complement(16559442..16564961)
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AA seq
312 aa
AA seq
DB search
MPVSRMRMRPWLEMQINSNQIPGLIWINKDKMIFQIPWKHAAKHGWDIEKDACLFRSWAI
HTGRYKVGEKDPDPKTWKANFRCAMNSLPDIEEVKDKSINKGSSAVRVYRMLPPLTKDQK
KERKSKSSREARNKSKRKLHEDMRTEESAERLTSTPLPDDHSSYTTHDYTGQEVEVENTS
ITLDLSSCEVSGSLTDWRMSNEIAMADSTNDLYQLQVSPLGSSSEVVDEDEDEMKPHMMK
PFEPAQDWHTTSVEGKGFFTNEPGTQTMCSTFGCEIDMSSGELEFHMLDQKSSLEFSWLD
TVRPMQAISCSL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctcaaggatgcgcatgagaccctggttggaaatgcagattaattccaatcaa
ataccggggctgatctggatcaacaaggataagatgatatttcagatcccatggaaacat
gcagctaagcatggctgggacatagagaaggacgcctgcctcttccggagctgggccatc
catacaggaagatataaagtaggtgagaaggaccctgacccaaaaacctggaaggcaaac
ttccgctgcgccatgaattcactgcccgacattgaagaagtgaaggacaaaagcatcaac
aaaggctccagcgctgtccgtgtgtacaggatgctcccacccctgacaaaggaccagaag
aaggaaaggaagtcaaagtcttcaagggaagcaagaaacaagagcaagagaaagctgcac
gaggatatgaggacggaggagtcagcagaacgactaaccagcacccctctgcccgatgac
cacagcagctacaccactcacgactacacggggcaggaagtggaggtggagaacacgtcc
atcaccttagacctctcgtcctgtgaggtgagcggctccctgaccgactggaggatgtcg
aatgaaatcgccatggctgacagcaccaacgacctctaccagctccaggtgtcccctctg
ggttcgtcctcagaagttgtggatgaagatgaggatgaaatgaaaccacacatgatgaag
ccatttgaacctgcccaggactggcacacaaccagcgttgaggggaagggcttcttcacc
aacgagccgggcacgcagaccatgtgcagcacgtttggctgcgagatcgacatgtcttca
ggggagttggagttccacatgctggaccagaagagcagcctggaattctcctggctggac
accgtcagacccatgcaggccatctcctgcagcctgtaa
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