Lagopus muta (rock ptarmigan): 125700611
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Entry
125700611 CDS
T09141
Symbol
RAI1
Name
(RefSeq) retinoic acid-induced protein 1 isoform X1
KO
K19749
retinoic acid-induced protein 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125700611 (RAI1)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
125700611 (RAI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
125700611
NCBI-ProteinID:
XP_048817496
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All DBs
Position
15:complement(10390397..10450819)
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AA seq
1894 aa
AA seq
DB search
MQSFRERCGFHGNQQSYQPTSQDTSRLENYRHQSQAGPNCERQRLVAKEYYSQQQLPYAG
YENSAAEKYHRGNKQLAGQQLQGRPAFSNYAVQENSPYPARYSGDESLQAWGGQPPALPK
YEDSLMKKTSPAAGGRPYHEPAAAPLPFRTHFPQQQQQQPPALPYPKLQRQKLPNDVSSP
MPFSQSPHFGQHSQSFPASSTYSSVPGGSQPAHSYKSCTAPSGQPPLERPLGSAASLAPG
PRVPNLHGYQPNRIGYEQPPQPPPQPPPPPQPPQPPQPPQPQPQPLQGRHHAPESLHYQN
LAKYQHYNQAGQTYCQSDAPPVRTPEQYYQTFSPSASHSPARSVGRSPSYSSTPSPLMPN
LENFQYSQQPLNAGAFPAGITDHSHFMPLLNPSPTDGTSPDAQSGNCKNLPKEKLPENLL
SDLSLQSLTALTSQVENISNTVQQLLLSKSAVPQKKGIKTPARTPEQLKGQHCSPESSTY
SAEQVGTPLSDPLSTPQSVHAETQDADYLSGSEDQLERSFLYCNQNRSPARVNSNSKAKP
ESVSTCSVTSPDDMSTKSDDSFQSIHASLPLESFTKYVTNERDCPRLLLSALSQEELASE
IIVLQDAINEKEDKAWPNSPMLSKEATKSPFQLENHRPCLDSMVKGSWPSQGDSSTLTEP
LKMDKASGGSTGKDFGDEVYEGPQVEFAATETKDTLKDAGPLAFNSKPSVPAATSSAGAS
GFSCYSNTTANSVGSENAMEHFEWPEENLGEACLRWKELGSGLQASDLPKGLFPSKMGGS
CKEKKNACGLDLCDGEQPDKSETTRDFGQQAMEEEEEETLTYDEATKVDSERWLQDTRHC
CTAGDFSEIPMISSPELKESDLEVEEYSSLCELAGTEQKSVPYAASPPKPPEIPAVLSAS
EVPMSAEETVSTVEKESSVPSARLSGQSIILLGPAVGTETKVKSWFKSSLPHIQPEEESG
GVEKSHPEAVDSEPVLSLGVKTQPAPENALVKTEPVSRGKNLRNKRIHCRLPEEDSAGNA
VPSPFSELPALCVGPDGQGEMLSKNVHSQTPRFAAEGLPARMCTRSFTALAEPRAPAPLE
GLKAPMHQEKMGKKPACGVKQRVAFKARKRSGRPAPKVIQSAGGDATITVSSLVPAEEVV
GPGPTDGDVADGGERDQRSMILRSRTKTQEVFYTKRRRGKRAADVRLKNCKAPKKLISNN
HLPPAFKLTPPGSPHKEGKVGTRMKLPKAGPGVGGKMSERPLHSLKRKSTFISPIPAKKR
NLVLRSNSGGVKEEKPEGPHSLFKKMPVAKKVKAKLPPKSPGEAVPKPPPVKEAPDVCIK
ITSRAAFQEATKTKVLPPRKGRGLKLEAIVQKITSPNLKKFTCKTAAAAATVAATYGTSL
SMAGTERERAVKHGAVAPAVGDARLPKLAAAQKAPAVPPAEQLCRNPHGRALKGKLGSGK
KLCADGSQSEGCVQAAGAQPSSAVAAKNMALLPKKRNRKGKAAALGMAKAPLGPALPLSP
RERAAGPGGGDEGKKPKSEEKEVAGGDGPMAGGTARGAKPRANHANYNGYSKRQRKRLGH
GKAKAVPVRCKSRGKRRRPAQQAPLPDPAEPEIRLKYISCKRLRADSRAPPFAPYVHVER
RGDFTTACTVINSPGDEARLQRGPSSTVPRPRAALPASSAMHLGPVVSKALSAACLVCCL
CRSPANYKDLGDLCGPYYPEDCLPKKKSRLKEKARAEGEEGGAAERPRGVAESGWAAGGR
AGRQEGATEPGKPSMLRSSPRGVFRRLQSCYCCDERTEGEEAAEKPRRHECTKAESPPQP
EPAGDTQEHWLHEACAVWTAGVFLVAGKLYGLQEAVKAAADLKCSSCQQAGATVGCCQKG
CPHTYHYACAVDTGCLLTEESFSLRCPKHKRQPV
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctttcgagaaaggtgtggtttccatggcaaccagcagagctaccagccgact
tcacaagatacatcacgcctggagaattacaggcatcaaagtcaggcagggccgaactgc
gagcggcagaggctggtggcgaaggagtactacagtcagcagcaactgccatacgcgggc
tacgagaacagcgccgcggagaaataccaccggggaaacaagcaattagcagggcagcag
ctgcaaggcaggccggccttttccaattacgctgtgcaggagaacagcccctacccagcg
cgctattcgggggacgagagcctgcaggcgtggggcgggcagccaccggcgctgcccaag
tatgaggacagcctgatgaagaagacgtcgccggcagcaggagggcggccgtaccatgag
ccggcagcggccccactgcccttccggactcacttcccacagcagcagcagcagcagccg
cccgcgctgccctaccccaagctgcagaggcagaagctgcccaacgacgtctcttcgccc
atgcccttctcacagagcccccattttgggcagcactcacagtccttccccgcctcctcc
acttattcctctgtgccagggggcagccagccggcgcattcctacaagagctgcacggca
ccttcagggcagccgccgctggagcggcccctgggcagtgccgccagcctcgcccctggc
ccccgtgtgcccaacctgcacggttaccagcccaaccgcatcggctatgagcagcccccg
cagcctcccccgcagcccccgccgccgccgcagcctccgcagcccccgcagcctcctcag
ccccaacctcagcccttgcagggaaggcatcacgccccagagagcctccactaccaaaac
ttggccaagtatcagcattacaaccaagcggggcagacctactgccagagtgacgcaccg
cccgtccgcacgccggagcagtactaccaaaccttcagccccagcgccagccactcgcca
gcgcgctccgtcggtcgctccccatcctacagctctacgccgtcccccctgatgcccaac
ctggagaactttcagtacagccagcagccgctcaatgccggcgccttcccggccggcatc
actgaccacagccatttcatgccgctgctcaacccctctcccactgacgggacgagcccg
gatgctcaatctgggaattgcaagaatttgccgaaggagaaactgcctgaaaaccttctg
tcagacctgagcctgcagagcctgacggcgctcacctcccaggtggagaacatctccaac
accgtccagcagctgctgctttccaaatcagccgtgccccagaaaaagggcatcaagacc
ccagcgaggacccctgagcaactcaaggggcagcactgcagcccagagagcagcacgtac
tccgcagagcaggttgggaccccgctgtcggacccactcagcaccccgcagtccgtccac
gccgagacacaggacgctgactatctgagcggttcggaggaccagctggagaggagcttc
ctgtactgcaaccagaaccgcagccctgcccgtgtcaacagcaactccaaggcaaagccc
gagtcggtgtccacgtgctctgtcacctccccagatgatatgtccaccaaatcggatgac
tccttccagagcatccatgccagcctgcccctggagtctttcaccaagtatgtgaccaac
gagcgggactgtccccggctgctgctcagtgcactgtcccaggaggagctggcctccgag
atcatcgtcctgcaggacgccatcaatgagaaggaggacaaagcctggcccaattcaccc
atgttgagcaaggaggccacaaaatcccccttccagctggagaaccaccggccatgcctg
gactccatggtgaagggctcatggcccagccagggtgactccagcaccctcactgagccc
ctcaagatggacaaggcttcggggggcagcacggggaaggactttggggacgaggtgtac
gagggtccccaggtggagtttgcggccaccgagaccaaggacacacttaaggatgcgggc
ccgttggctttcaactccaagcccagcgtcccagctgctacttccagtgcaggggcctcc
ggcttcagctgctattcgaacaccacagccaactcggtgggctctgaaaatgccatggag
cactttgagtggccagaggagaacctgggcgaggcgtgcctcaggtggaaggagctgggc
tcaggcctgcaagcctctgacctccccaaaggcctcttccccagcaaaatgggagggtcc
tgcaaggagaaaaaaaatgcttgtggcttggacctgtgtgatggcgagcagccagacaag
agtgagacgacccgggactttggccagcaggcgatggaggaggaagaggaggagacgctg
acctacgatgaggccacgaaggtggacagtgagaggtggctgcaggacacgcggcactgc
tgcacagctggggacttcagtgagatccctatgatctcatcaccggagctgaaggagtcg
gacttggaagtggaggagtactcctcactctgcgagctggcgggcacggagcagaagtcg
gtgccctacgctgcctcacctcccaagcccccggagatacccgccgtgctgtctgccagc
gaggtgcccatgtctgccgaggagaccgtcagcacagtagagaaggagagttctgtgccc
tcggcgcgtctctccggtcagtccatcatcctgctgggcccagcagtgggcacggagacc
aaggtgaagagctggttcaaatcctccctgccccacatccagcctgaggaggagagtggg
ggagtagagaagtcccacccggaagcagtagactctgaacctgttttgtcacttggggtg
aagacgcaaccggcacctgaaaatgcattggtgaaaacagagcctgtctcacggggcaag
aacctccgcaacaaaaggatccactgccggctgccggaggaggacagtgctggcaatgca
gtgccgagccccttcagtgagctgccagcactgtgcgtggggccggacggacaaggggag
atgctgagcaagaatgtgcacagccagacgcccaggtttgcagcggagggcttgccggca
cgcatgtgcacccgctccttcaccgccctcgctgagccccgtgccccagccccactggag
gggctgaaggcaccaatgcaccaggagaagatgggcaagaagccagcatgtggtgtgaag
cagcgggtggctttcaaagctaggaagcgcagcggccggccagcccctaaggtcatccag
agcgccggtggtgatgccaccatcacggtgtccagcttggtgccagctgaagaggtggtg
gggccagggccgacggatggggatgtggcagatggtggggagagggaccagcgctcgatg
atcctgcgctcccggacgaagacacaggaggttttctacacaaagaggcggcggggcaag
cgagcggctgatgttcgactgaagaactgcaaagcacccaaaaagctcatctccaacaac
cacctcccacccgccttcaagttgacccccccgggcagcccccacaaggagggaaaggtg
ggcaccaggatgaagctgcccaaggcggggccaggggtgggcggcaagatgtcagagcgg
cccctgcactcgctgaagaggaagtccaccttcatctcccccatccctgccaagaagagg
aacctcgtcctgcgcagcaacagcggcggcgtgaaggaggagaagccggagggtccccac
agcctcttcaagaagatgcccgtggccaagaaggtgaaagcaaagctgcctcccaagagc
cccggcgaagctgtccccaaaccccccccagtgaaggaggcccccgacgtctgtatcaaa
atcacctcgcgggcggccttccaggaggccaccaagaccaaagtgctgcctccccgcaag
ggccgcggcctcaagctggaggccatcgtgcagaagatcacctcgcccaacctgaagaag
ttcacctgcaaaacggcagcggcggcggccacggtggcggccacctatggcacctcgctg
agcatggcggggacggagcgcgagcgggcggtgaagcacggtgctgtggccccggcggtg
ggtgatgcgcggctgcccaaactggcggcggcacagaaggcacccgccgtgccgccggct
gagcagttgtgccggaaccctcatggcagagcgctgaaggggaaactgggcagcgggaag
aagctctgtgctgacggctcgcagagcgagggctgcgtgcaggctgctggggcacagccc
agctcggccgtggcggccaagaacatggcgctgctgcccaagaagaggaaccgtaagggc
aaagcggcggcgctgggcatggccaaggcacccctcggccccgcgctgccgctgtcaccc
cgtgagcgtgcagccgggccgggcggtggggacgagggcaagaaaccaaagagtgaggag
aaggaggtggcgggcggcgatgggccaatggcgggtgggacggcgcggggggcaaagcca
cgggccaaccacgccaactacaacggctactccaagcggcagcgcaagcgtttgggccac
ggcaaagccaaagcggtgccggtgcgctgcaagagccggggcaagcggcggcggccggcc
cagcaagccccgctgccagaccctgcagagcccgagatccgcctcaaatacatctcctgc
aaaaggctgcgggccgacagccgggcccccccctttgctccctatgtccacgtagagcgg
cgcggcgacttcaccaccgcctgcaccgtcatcaactcgcctggcgacgaggcccggctg
cagcgggggccctccagcaccgtgcccagaccgcgggccgccctgccggcctcctccgcc
atgcacctggggccagtggtgtccaaggcgctgagcgcggcctgcttggtgtgctgcctg
tgccgcagccccgccaactacaaggacctgggcgacctttgcgggccctactaccccgag
gactgcctgcccaaaaagaagtcgcggctgaaggagaaagcgcgggcggagggcgaggag
ggcggcgcagcggagaggccccgcggggtggcggagagcggctgggcagccggcggcagg
gcgggcaggcaggagggtgccacggagccgggcaagccgagcatgctgcgctccagcccc
cggggtgtgttccgaaggctgcagagctgctactgctgtgacgagaggacagagggcgag
gaggcagccgaaaagccccggcggcacgaatgtaccaaggccgagtcccccccacagccc
gagccagcgggagacacgcaggagcactggctgcacgaggcctgtgccgtatggaccgct
ggggtgttcctggtggcggggaagctctacgggctgcaggaggccgtcaaggcggctgcc
gacctgaagtgctcaagctgccagcaagcaggagccaccgtgggctgctgccagaagggg
tgcccccacacctaccactacgcgtgtgccgtcgacacaggttgcttattaactgaagag
agcttctctctgagatgtcccaaacataagagacagccggtgtag
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