Lagopus muta (rock ptarmigan): 125700945
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Entry
125700945 CDS
T09141
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
125700945 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lmut01001
]
125700945 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lmut04054
]
125700945 (CIITA)
Enzymes [BR:
lmut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
125700945 (CIITA)
Protein kinases [BR:
lmut01001
]
Serine/threonine kinases: Other
TAF1 family
125700945 (CIITA)
Pattern recognition receptors [BR:
lmut04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125700945 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
NB-ARC
LRR_14
LRR_9
nSTAND_NTPase5
DUF7086
NPHP3_N
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
125700945
NCBI-ProteinID:
XP_048818250
LinkDB
All DBs
Position
15:6234877..6261657
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AA seq
1109 aa
AA seq
DB search
MDSASVSENGYLDLLLCDIDPVHLFTFSDPKSSGNEGEFFADPEIDTCNYEQFNNMDFLC
TVENDESEDELYLSSSARDAYARIAELAEYVLKDQHEKQVEDAFAGNLILDEMALENTEK
FTDVKKQKCHKRTFLGSAETCSDTSEPKYKKIVDAPAVSTGNGCFLTTSLNSHSSDCTPL
THQHMSFSVPTINFPLGNFVIPGSSVPLIPESLPLGMKDNRENIDSVDPAQQKINYFLGN
DQSNAIKYPALTSSTELMVSPGFQVNLNGLEMYKEVQVPVILSEETSRRPRSVEAFCTSL
MDYFRDVCKSVSVEREMSLDHMYIDGTLRQSQIETKPGKNSVKSVEKDSVTNSQQGKEKA
VLERNQIFQIPGGKELETKVIVVLGKAGMGKSILVQKICQDWSNGEFPQFEFVFWFDCKQ
ISLPEKWYSLKDLLLDFFVRPQEGSKEIFEYLLQNSTKVLLVFDGLEGLHGHENFPHCSA
SQPSKDLCRMKELLSGLIQKKILNGCTLLLTARTKEKVCQYVSKVDKTIEIVGFSPQQRE
LYITKYFEGFPSCDNALNLIKECEYLFSHCYSPVMCRFVCFLCEAILEMGDQGLPSTLTT
LFLKFVQQKIMPMQTDVTDVTLAQNQENLATLACIAWYLGEKHQSAMKSDLLPSKKVKEF
ALKNGFFLPFAFPKHSGTGEEEYGTMFSDFVIQNFLGALHLILAEGIKDKSLIKYLSFPS
KKKKPYNWLHLVPRFLAGLLFLQDDTYFCSSNKGVKKSTKKQKMLLKYIKRLQINNLCPE
RLLELLHCIYETQNNYLLQHVALRLKPDLSFLGTVLTPPDVHVLSSTLKRSRKEFSLDLQ
NSSIDTHGLKDLVGLKNVTSFRASLSDTIKLWKYLEQTKDYELLRVSTEKFVLDPFKAKT
MKDISDLSDLVEMQEIIINCVQDTSSCSSYEIPAVKNLRKLEFALGPACGLQGFLKLVEI
LAAFPSLQHLDLDALSENGIGDEGAKSLCEVFPTLTSLETLNLSQNKITDVGAEKLATAL
PSLSSLTTLSLYNNSICDFGAENLAKVLPAMASLRVLDIQYNKITGVGAQQLTDSLRKCP
HIKNLVMWNPTIPYGVLEHLQQLDSRISV
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcatctgtgtctgaaaatggctaccttgatttgctgctttgtgatattgat
ccagtgcatctatttacattctcagaccctaagtcatctggaaatgaaggtgaattcttt
gcagatcctgaaattgatacctgcaactatgaacaattcaataatatggatttcctgtgt
acagtggaaaatgatgaaagtgaggatgaattgtatctctcttccagtgccagagatgct
tatgctagaatagctgaattagcagaatatgtgctcaaggatcagcatgagaagcaggtg
gaagatgcttttgcagggaaccttattttggatgaaatggctcttgaaaacactgagaaa
ttcactgacgtaaagaagcagaaatgtcacaaaagaacctttttaggctctgcagagact
tgttctgatacttcagaacctaaatacaagaaaattgtggatgcccctgcagtatcaaca
gggaatggatgtttccttacgacgtctctcaacagccattcatctgactgcaccccacta
actcaccagcacatgtccttttctgttcccactatcaatttcccactgggaaattttgta
attcctgggtcttcagtacctctgattccagagagtctgccacttggcatgaaagacaac
agagagaacatagactctgtggatcctgctcagcagaaaattaattattttcttggaaat
gatcaatctaatgctataaaatatccagcactgacttcctccactgaattaatggtatcc
ccaggttttcaagttaatttaaatggcttagaaatgtacaaagaagtccaagttccagta
attctttctgaagaaacttcaagaagaccaaggtcagtggaagctttctgtacatcgctt
atggattacttccgagacgtatgcaaatctgtgtctgtggagcgtgaaatgtctcttgat
cacatgtatattgatggtacacttaggcaaagccaaattgaaaccaagcctgggaagaac
agtgtaaaatcagtggaaaaggattcggtaactaacagtcagcaagggaaggaaaaggca
gtccttgaaagaaaccaaatatttcaaatcccaggaggtaaagagttagagactaaagtg
attgtggtgctgggaaaagcaggaatgggcaaaagcattcttgttcagaagatctgccag
gactggtccaatggagagtttcctcagtttgaatttgtcttttggtttgactgcaaacaa
ataagcttgcctgagaagtggtacagcttgaaggatctacttcttgacttttttgtgaga
cctcaggagggaagcaaagagatcttcgagtatttacttcagaattctactaaagtcctt
ctggtttttgatggtttggaagggttgcacggccatgagaattttcctcattgttcagcc
agccagcctagcaaagacttgtgccgcatgaaggagctgctttcgggactcatccaaaag
aagatactcaatggctgtactttattacttacagcaagaacaaaagaaaaggtgtgccag
tatgtatccaaagtggataagactattgaaatagtaggattctcccctcagcagagagaa
ctgtacataaccaaatactttgaaggattcccctcgtgcgacaatgcactgaatttaatc
aaagagtgtgagtacctcttcagtcattgttacagccctgttatgtgtagatttgtttgt
tttctctgtgaggcaatacttgaaatgggagaccaaggccttccttcaactcttactaca
ctcttcctgaaatttgttcagcaaaaaataatgcctatgcaaacagacgttacagatgtt
acacttgcacaaaaccaagagaatcttgctacgctagcctgtatagcctggtatcttgga
gaaaagcaccaaagtgccatgaaaagtgaccttcttccttctaagaaagttaaagagttt
gctctgaaaaatggatttttcctgccatttgcattccccaaacattcaggtacaggagaa
gaggaatatgggaccatgttctccgattttgtcattcagaatttcttgggtgcacttcac
cttatattagcagaaggcatcaaggacaaaagtttaataaagtatctgtcttttccatcc
aaaaagaagaaaccttataactggttacatttagtgcctcgatttttggctggattgtta
ttcctccaggatgacacctacttctgctcttcaaacaagggtgtaaaaaaatcgaccaag
aagcagaaaatgctcctgaaatatattaaaaggttgcaaataaacaacctctgtccagag
aggttacttgagcttttgcactgtatttatgaaacacaaaacaattatctcttgcagcat
gtggccttaaggctcaagccagacctgtcctttctgggcactgttcttacaccaccagat
gtccatgtactgtcctctactttaaaaaggtcaagaaaagagttttccttggatttgcag
aacagcagtattgacacgcacgggctaaaagacttggttggcctgaagaatgtgacatcg
ttcagggcctccctcagtgatacaatcaaactatggaaatatttagaacagacaaaagac
tatgaactgctgagagtgtcaacagaaaaatttgttcttgatccctttaaggcaaagaca
atgaaagacatcagtgacctttctgacctcgtagaaatgcaggagataataatcaattgt
gttcaagatacctccagttgcagcagctatgaaattcctgccgtaaaaaacctgagaaaa
ctagaatttgctctgggtccagcgtgtggccttcagggattcctaaaactcgtggaaatt
ctggcagcatttccatcactgcagcatttagaccttgatgctctgagtgaaaatggcata
ggagatgaaggagcaaagagtctgtgtgaagtctttccaacactgacatcactggaaaca
ttaaacttgtcacagaataagataacagatgtgggtgcagagaaactagctacagctctt
ccctccttgtcttcattaacaacattaagcttatacaacaatagcatttgtgattttgga
gcagaaaaccttgcaaaagtccttcctgcaatggcttctttaagagtgctagacattcag
tacaacaaaataactggtgtaggagcccaacagctgactgacagcctaagaaaatgtccc
catattaaaaatttggtgatgtggaatcctacaattccatatggagttcttgaacacctt
cagcagctggactccaggatcagtgtgtag
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