Lagopus muta (rock ptarmigan): 125700961
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Entry
125700961 CDS
T09141
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125700961 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125700961 (PARN)
Enzymes [BR:
lmut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125700961 (PARN)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125700961 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125700961
NCBI-ProteinID:
XP_048818296
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All DBs
Position
15:14499711..14554635
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AA seq
635 aa
AA seq
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MEVIRSNFKDNLSKVYEAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHAEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQRKF
IDKTVEQIEEFLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKDIISNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLQGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRAKRKCTEDSWKEMERKRLK
TQGAPYVSQSRYYCVNSFTGTSVAGKRSMSPIQEETGSDNLEEEGVPEDETNCYAESPPD
VKKRAKRFKKIKREQVSAGSLTSNSTEIFEVPETW
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataacctaagcaaagtgtacgaagctgtcgaa
gaagcggacttcctggccattgatggggagttctcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacacaccagaagagcggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacgcagaa
gagaagtatattatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccggatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccatatttaaatcaggaagaggaaaga
cagttaagagaacagtatgatgaaaagcgttctcaggccaatggtgcaggatctctctcc
tatatttctcctaatgccacaaagtgtcctgttgcaattcctgaagatcagagaaaattc
attgataaaacagtggaacaaatagaagaatttttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacagggtttcagaggaaactaatttaccagaccttgagctggaag
tatccaaaaggtatccacgttgaaactctagagtcagataagaaggagagatatattgtt
attagtaaggtagatgaagaagagcgaaaaagaagagaacagcagaaacaagcaaaggaa
caggaagaactgaatgatgcagtaggattttccagagttgttcatgccattgcaaattct
ggcaaacttgttattgggcacaacatgctgctagatgttatgcatactatacatcagttc
tattgtcctctacctgatgacctaagtgaattcaaggaagtaacgtcatgtgtctttccc
cggctattggatacaaaactgatggcaagtacgcagccttttaaggacatcattagtaat
acatcccttgcagaactggaaaagcgtttaaaagaggttccgttcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgacacagcttctgaacaacttcatgaagcggga
tacgatgcttacattactggactgtgcttcatctccatggctaactttttaggttcgttt
cttagtcctccaaaaaatcatgtgtctgctagatcaaaactcatcgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctgaatttgcaaggaccagacttg
cagccaaaacgagatcatgttcttcacgtcacttttcccaaagagtggaagactagtgac
ctttaccagctttttagtgcctttggtaacattcaggtttcatggattgatgatacgtca
gcgtttgtatcattgagccagccagaacaagtacaaatagctgtgaacaccagcagatat
gctgaaagttacaggatccagacatacgcagaatatgttgaaaaaaaacatgaagaaaag
cgagcaaagagaaaatgtacggaagatagttggaaggagatggagagaaaacggttgaaa
actcaaggtgcaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtgtagcgggaaagagaagtatgagtcctattcaggaagaaactggttctgacaat
ttggaagaggaaggggttccagaagatgagaccaactgctatgcagagtcacctccagat
gttaagaagagagccaaaaggttcaaaaaaatcaagagagaacaagtttcagcaggaagc
ctcacaagtaattccactgaaatttttgaagtccctgaaacatggtag
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