Lagopus muta (rock ptarmigan): 125701156
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Entry
125701156 CDS
T09141
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125701156 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125701156 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125701156 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lmut00535
]
125701156 (COL9A3)
Proteoglycans [BR:
lmut00535
]
Extracellular matrix (ECM) proteoglycans
Others
125701156 (COL9A3)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125701156
NCBI-ProteinID:
XP_048818737
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Position
16:complement(5581401..5614010)
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AA seq
675 aa
AA seq
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MTVFPTLGLLFLCQLLAATSAQRVGPQGPPGPRGPPGPSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGAAGEAGLPGLPGVDGLTGTDGPPGPNGPPGDRGALGPAGPPGPAGKGLPGPPG
PPGPSGLPGGNGFRGPPGPSGLPGFPGPPGPPGPPGLAGIIPEGGGDLQCPALCPPGPPG
PPGMPGFKGHTGHKGEPGEIGKEGEKGSPGPPGPPGIPGSVGLQGPRGLRGVPGPMGPAG
DRGDIGFRGPPGIPGPPGRAGDQGIKGPQGFRGPKGDTGRPGPKGNPGARGLIGEPGIPG
KDGRDGAPGLDGEKGDAARMGVPGEKGPNGLPGLPGRAGIKGSKGEPGSPGEMGEAGPSG
EPGIPGDVGIPGDRGLPGPRGATGPVGLPGPIGAPGVRGFQGPKGASGEPGLPGPTGIRG
ESGDRGPTGVIGAKGNQGIAGADGLPGDKGELGPFGPPGQKGEPGKRGELGPKGAQGPNG
TAGAPGIPGHPGPMGHQGEQGVPGITGKPGPPGKEASEQHIRELCGEMINDQIAQLAANL
RKPLAPGMTGRPGPAGPPGPPGARGSVGHPGARGPPGYRGPTGELGDPGPRGDTGEKGDK
GPAGQGIDGPDGDQGPQGLPGVPGISKNGRDGAQGEPGLPGDPGTPGAVGAQGTPGICDT
SACMGAVGASTSKKS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactgtattccccactcttgggcttctcttcctttgtcagctattagccgcaacatca
gctcagagagtaggaccacaaggccctcctggaccccgaggaccccctggaccatctggc
aaggacggcatagatggtgagccgggccctcctggtttgccaggcccaccaggaccaaag
ggtgcaccaggaaagcctggagcagctggtgaagctgggctgcctggccttcctggagta
gacggtttaacgggaactgatggccctcctggcccaaatgggcctccaggagaccgtggt
gcattaggacctgctgggccacctggaccagctggtaaaggactaccaggacctccaggg
cctccaggacccagtggacttccaggtggaaatggatttcggggtcctcctgggccttct
ggtctgccaggattcccagggcctcctgggccacccggacctcctggtcttgcaggcatc
attcccgaaggcggtggggaccttcagtgcccagctctgtgcccaccgggtcctcctggt
cctccaggaatgccaggcttcaagggacacactggtcacaaaggagaacctggtgaaata
ggcaaagaaggagagaagggcagccctggccctccaggtcctccaggcatccctggcagc
gttggcctgcagggcccaagaggactaagaggtgtccctggtccaatgggtccagctggt
gacagaggtgacatcggtttcagagggccgcctggaatcccaggacctccgggcagagct
ggagaccaaggaatcaaaggacctcaaggattcagagggcccaaaggcgatactggtaga
cccggaccaaaaggaaacccaggggctcgtgggctcataggagaacctggcatacctggc
aaggatggacgggacggggctcctggactcgatggtgagaagggtgatgcagctcgtatg
ggggttcctggagagaaggggccaaacggacttcctggactgcctggaagagcagggatt
aaaggctctaaaggtgaaccaggcagtcctggagagatgggagaggcaggtccctctgga
gagccaggtatccccggcgacgttggtattcctggtgatagaggtctgccgggacccaga
ggagcaactggccctgttggtctcccaggccccattggagcccccggtgtccgaggcttc
cagggtcctaaaggtgccagtggagaacctggccttcctggtccaactggaattcgtgga
gagtctggtgacaggggtcctactggtgttattggtgccaaaggtaaccagggcattgct
ggagcagacggtctcccgggtgacaaaggagaactgggtccctttggtcctcctggccaa
aaaggagagccaggaaaaagaggagaactgggtccaaaaggtgctcaaggccccaatgga
acagctggagctccagggatcccaggacacccagggcccatgggccatcagggggagcag
ggcgttcctggcatcacaggcaaaccagggcctcctggcaaagaggccagtgaacaacat
ataagagaactctgtggggaaatgataaacgatcaaattgcacagttagctgctaatctg
aggaagcctttagctcctgggatgacagggcgccctggccctgctggtccaccaggtcct
ccaggagctagaggaagcgttggccatcctggtgctcgtggtccccctgggtacagaggg
ccaacaggagagcttggtgaccctggtcccagaggtgacactggtgaaaagggagataaa
ggaccggctggacaaggaattgatgggcctgatggtgatcaaggacctcaaggacttcct
ggtgtacctggaatcagtaagaacgggcgggatggagctcagggtgaacccggccttcca
ggggatcctggtactcctggtgctgttggggctcagggaactccaggcatctgtgacaca
tcagcctgcatgggagctgttggagcatcgacttccaaaaagtcataa
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