KEGG   Lagopus muta (rock ptarmigan): 125701156
Entry
125701156         CDS       T09141                                 
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
lmut  Lagopus muta (rock ptarmigan)
Pathway
lmut04510  Focal adhesion
lmut04512  ECM-receptor interaction
lmut04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lmut00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125701156 (COL9A3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125701156 (COL9A3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125701156 (COL9A3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:lmut00535]
    125701156 (COL9A3)
Proteoglycans [BR:lmut00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   125701156 (COL9A3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 125701156
NCBI-ProteinID: XP_048818737
LinkDB
Position
16:complement(5581401..5614010)
AA seq 675 aa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NT seq 2028 nt   +upstreamnt  +downstreamnt
atgactgtattccccactcttgggcttctcttcctttgtcagctattagccgcaacatca
gctcagagagtaggaccacaaggccctcctggaccccgaggaccccctggaccatctggc
aaggacggcatagatggtgagccgggccctcctggtttgccaggcccaccaggaccaaag
ggtgcaccaggaaagcctggagcagctggtgaagctgggctgcctggccttcctggagta
gacggtttaacgggaactgatggccctcctggcccaaatgggcctccaggagaccgtggt
gcattaggacctgctgggccacctggaccagctggtaaaggactaccaggacctccaggg
cctccaggacccagtggacttccaggtggaaatggatttcggggtcctcctgggccttct
ggtctgccaggattcccagggcctcctgggccacccggacctcctggtcttgcaggcatc
attcccgaaggcggtggggaccttcagtgcccagctctgtgcccaccgggtcctcctggt
cctccaggaatgccaggcttcaagggacacactggtcacaaaggagaacctggtgaaata
ggcaaagaaggagagaagggcagccctggccctccaggtcctccaggcatccctggcagc
gttggcctgcagggcccaagaggactaagaggtgtccctggtccaatgggtccagctggt
gacagaggtgacatcggtttcagagggccgcctggaatcccaggacctccgggcagagct
ggagaccaaggaatcaaaggacctcaaggattcagagggcccaaaggcgatactggtaga
cccggaccaaaaggaaacccaggggctcgtgggctcataggagaacctggcatacctggc
aaggatggacgggacggggctcctggactcgatggtgagaagggtgatgcagctcgtatg
ggggttcctggagagaaggggccaaacggacttcctggactgcctggaagagcagggatt
aaaggctctaaaggtgaaccaggcagtcctggagagatgggagaggcaggtccctctgga
gagccaggtatccccggcgacgttggtattcctggtgatagaggtctgccgggacccaga
ggagcaactggccctgttggtctcccaggccccattggagcccccggtgtccgaggcttc
cagggtcctaaaggtgccagtggagaacctggccttcctggtccaactggaattcgtgga
gagtctggtgacaggggtcctactggtgttattggtgccaaaggtaaccagggcattgct
ggagcagacggtctcccgggtgacaaaggagaactgggtccctttggtcctcctggccaa
aaaggagagccaggaaaaagaggagaactgggtccaaaaggtgctcaaggccccaatgga
acagctggagctccagggatcccaggacacccagggcccatgggccatcagggggagcag
ggcgttcctggcatcacaggcaaaccagggcctcctggcaaagaggccagtgaacaacat
ataagagaactctgtggggaaatgataaacgatcaaattgcacagttagctgctaatctg
aggaagcctttagctcctgggatgacagggcgccctggccctgctggtccaccaggtcct
ccaggagctagaggaagcgttggccatcctggtgctcgtggtccccctgggtacagaggg
ccaacaggagagcttggtgaccctggtcccagaggtgacactggtgaaaagggagataaa
ggaccggctggacaaggaattgatgggcctgatggtgatcaaggacctcaaggacttcct
ggtgtacctggaatcagtaagaacgggcgggatggagctcagggtgaacccggccttcca
ggggatcctggtactcctggtgctgttggggctcagggaactccaggcatctgtgacaca
tcagcctgcatgggagctgttggagcatcgacttccaaaaagtcataa

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